Results 21 - 40 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28047 | 3' | -64.2 | NC_005887.1 | + | 14201 | 0.66 | 0.260527 |
Target: 5'- gUCG-GCGUGCgaGGUGUUgcaGGUCGCCGCg -3' miRNA: 3'- -GGCuCGCGCG--CCGUAG---CCGGCGGCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 27206 | 0.66 | 0.260527 |
Target: 5'- gUCGAGCGCcuGCauGGgGUCGGUCGgguccgugaCGCCg -3' miRNA: 3'- -GGCUCGCG--CG--CCgUAGCCGGCg--------GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 27095 | 0.66 | 0.273451 |
Target: 5'- gCCGcGCaGCacuGCGGCugccugcuUCgGGCCGCCGUUg -3' miRNA: 3'- -GGCuCG-CG---CGCCGu-------AG-CCGGCGGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 30637 | 0.66 | 0.286884 |
Target: 5'- gCCGuGCGCGCGGCGaagCGaucUUGCgaCGCCu -3' miRNA: 3'- -GGCuCGCGCGCCGUa--GCc--GGCG--GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 8247 | 0.67 | 0.224734 |
Target: 5'- gCCGAGCGCuCGGCGUCa-CCGCUc-- -3' miRNA: 3'- -GGCUCGCGcGCCGUAGccGGCGGcgg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 7994 | 0.66 | 0.254254 |
Target: 5'- gCgGGGCGCuCGucuccaGCcgUGGCCGgCGCCa -3' miRNA: 3'- -GgCUCGCGcGC------CGuaGCCGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 4940 | 0.66 | 0.260527 |
Target: 5'- aCCuGGCGUGCaGGCAgUCGcGaCCGCgcagCGCCa -3' miRNA: 3'- -GGcUCGCGCG-CCGU-AGC-C-GGCG----GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12309 | 0.66 | 0.286884 |
Target: 5'- gCUG-GCGCucgccuaugaggGUGGCGUCGGCgCGuUCGUCa -3' miRNA: 3'- -GGCuCGCG------------CGCCGUAGCCG-GC-GGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12136 | 0.66 | 0.254254 |
Target: 5'- aUCGAaggccGCGaCGCGGCGU-GGCUgGCCGgCg -3' miRNA: 3'- -GGCU-----CGC-GCGCCGUAgCCGG-CGGCgG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 15623 | 0.66 | 0.286884 |
Target: 5'- aUCGuGCGCcCGGUcuauGUCGaGCUGCCcgcgGCCg -3' miRNA: 3'- -GGCuCGCGcGCCG----UAGC-CGGCGG----CGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 40872 | 0.66 | 0.260527 |
Target: 5'- gCGAGCGCcgcacgccGuCGGCGUCGGgcucCUGCuCGCa -3' miRNA: 3'- gGCUCGCG--------C-GCCGUAGCC----GGCG-GCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 18837 | 0.66 | 0.258003 |
Target: 5'- cCCGcGCguucgucaGCGCGGCcgaacacGUCGGCaagcagaucaagggCGUCGCCg -3' miRNA: 3'- -GGCuCG--------CGCGCCG-------UAGCCG--------------GCGGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 28132 | 0.66 | 0.266926 |
Target: 5'- gCCGAacaGCGCGGCgccgcccuGUCcgaGGCCG-CGCCc -3' miRNA: 3'- -GGCUcg-CGCGCCG--------UAG---CCGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 37751 | 0.66 | 0.272793 |
Target: 5'- gCGAGCaucuguugcaucuGCGCGGCcugcgccUCGGCgGCuugcugCGCCu -3' miRNA: 3'- gGCUCG-------------CGCGCCGu------AGCCGgCG------GCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 821 | 0.66 | 0.277427 |
Target: 5'- gCCGAGCGCcucGCGGaucuugccgagcacCGUCGacuugccguucgaGCCGgUGCCa -3' miRNA: 3'- -GGCUCGCG---CGCC--------------GUAGC-------------CGGCgGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 27418 | 0.66 | 0.280104 |
Target: 5'- aCGgcAGCGCGCGGCGUgcGUCGaUCGCg -3' miRNA: 3'- gGC--UCGCGCGCCGUAgcCGGC-GGCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 12199 | 0.67 | 0.219191 |
Target: 5'- uUCGA-CGC-CGGCAUCGGC-GCCGaCUu -3' miRNA: 3'- -GGCUcGCGcGCCGUAGCCGgCGGC-GG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 24337 | 0.67 | 0.224174 |
Target: 5'- gCGuaAGCGCGCGGCGgucccauUCGGUCagGCUGUUc -3' miRNA: 3'- gGC--UCGCGCGCCGU-------AGCCGG--CGGCGG- -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 5604 | 0.67 | 0.24208 |
Target: 5'- aCCu-GcCGCGCGGCAUCGGCaCGauuaacaucguuUCGCa -3' miRNA: 3'- -GGcuC-GCGCGCCGUAGCCG-GC------------GGCGg -5' |
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28047 | 3' | -64.2 | NC_005887.1 | + | 18079 | 0.67 | 0.24208 |
Target: 5'- aCUGAuCGCGCuauccGGCGacucgccgUGGCUGCUGCCg -3' miRNA: 3'- -GGCUcGCGCG-----CCGUa-------GCCGGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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