Results 1 - 20 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28053 | 3' | -60.4 | NC_005887.1 | + | 14762 | 1.11 | 0.000202 |
Target: 5'- aCACGACGCUCGACGGCGCGCUCGCGCu -3' miRNA: 3'- -GUGCUGCGAGCUGCCGCGCGAGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 1477 | 0.86 | 0.014977 |
Target: 5'- -cCGACGC-CGACGGCgugcgGCGCUCGCGCg -3' miRNA: 3'- guGCUGCGaGCUGCCG-----CGCGAGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 32742 | 0.85 | 0.017305 |
Target: 5'- gCGCGGCGCUCG-CGuGCGCGCcggCGCGCg -3' miRNA: 3'- -GUGCUGCGAGCuGC-CGCGCGa--GCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 40528 | 0.85 | 0.019424 |
Target: 5'- aCGCGGCGCgcggcagcgaCGACGGUcugGCGCUCGCGCa -3' miRNA: 3'- -GUGCUGCGa---------GCUGCCG---CGCGAGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 1568 | 0.84 | 0.022179 |
Target: 5'- cCACGAaccucgaccgccgGCUCGGCGGCGCGCggCGCGCc -3' miRNA: 3'- -GUGCUg------------CGAGCUGCCGCGCGa-GCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 9329 | 0.81 | 0.034522 |
Target: 5'- aGCGACGCuguugauuaUCGACGGCaGCGUgUCGCGCa -3' miRNA: 3'- gUGCUGCG---------AGCUGCCG-CGCG-AGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 15550 | 0.8 | 0.039828 |
Target: 5'- gGCGACGaCUCGGCGcGCGCGaC-CGCGCu -3' miRNA: 3'- gUGCUGC-GAGCUGC-CGCGC-GaGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 39422 | 0.8 | 0.044641 |
Target: 5'- cCGCGGCGCUugcgcagcuuggCGGCGGCGuCGUUCGCGg -3' miRNA: 3'- -GUGCUGCGA------------GCUGCCGC-GCGAGCGCg -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 14532 | 0.79 | 0.054463 |
Target: 5'- gCGCGGCcgUCGGCGGCGCGUcgaucggcaugUCGCGCg -3' miRNA: 3'- -GUGCUGcgAGCUGCCGCGCG-----------AGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 34241 | 0.78 | 0.056027 |
Target: 5'- aGCGGCGcCUCGGCGaGCGCGgCgagcugCGCGCg -3' miRNA: 3'- gUGCUGC-GAGCUGC-CGCGC-Ga-----GCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 14580 | 0.78 | 0.060986 |
Target: 5'- uCAUGGCGCucuaccUCGcCGGCGCGCUCG-GCa -3' miRNA: 3'- -GUGCUGCG------AGCuGCCGCGCGAGCgCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 27405 | 0.78 | 0.062732 |
Target: 5'- uGCGGCGCgUCGuACGGCaGCGCgcggCGUGCg -3' miRNA: 3'- gUGCUGCG-AGC-UGCCG-CGCGa---GCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 2204 | 0.77 | 0.066369 |
Target: 5'- aCGCGGCGagCG-CGGCGCGCagCGCGCa -3' miRNA: 3'- -GUGCUGCgaGCuGCCGCGCGa-GCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 25153 | 0.77 | 0.068263 |
Target: 5'- gCGCGGCGCaacauugccgCGuGCGGcCGCGUUCGCGCg -3' miRNA: 3'- -GUGCUGCGa---------GC-UGCC-GCGCGAGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 14619 | 0.77 | 0.066369 |
Target: 5'- -uCGGCGCcgUCGAgGGCGCGCUCacggcagccgGCGCg -3' miRNA: 3'- guGCUGCG--AGCUgCCGCGCGAG----------CGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 18431 | 0.77 | 0.068263 |
Target: 5'- gCACGACGCU-GAuCGGCGCGauCUCGaCGCa -3' miRNA: 3'- -GUGCUGCGAgCU-GCCGCGC--GAGC-GCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 30940 | 0.76 | 0.090036 |
Target: 5'- aGCG-CGCUCGGCGGUgaugucgGCGCcCGCGUa -3' miRNA: 3'- gUGCuGCGAGCUGCCG-------CGCGaGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 9598 | 0.76 | 0.090286 |
Target: 5'- gCAUGGCGCgCGcCGGCGCGCaCGCGa -3' miRNA: 3'- -GUGCUGCGaGCuGCCGCGCGaGCGCg -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 40754 | 0.76 | 0.078539 |
Target: 5'- gGCGAuCGC-CGuuGGCGCGC-CGCGCg -3' miRNA: 3'- gUGCU-GCGaGCugCCGCGCGaGCGCG- -5' |
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28053 | 3' | -60.4 | NC_005887.1 | + | 4480 | 0.76 | 0.078539 |
Target: 5'- cCGCGAaggUGC-CGaACGGCGCGCgcaUCGCGCg -3' miRNA: 3'- -GUGCU---GCGaGC-UGCCGCGCG---AGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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