miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28054 5' -58.3 NC_005887.1 + 1782 0.66 0.501694
Target:  5'- -aCUUGCUCGAgCGCGCCGagaacucguGCGCGa- -3'
miRNA:   3'- gcGGACGAGCUaGUGCGGC---------UGCGUca -5'
28054 5' -58.3 NC_005887.1 + 34556 0.66 0.498588
Target:  5'- uCGUCUGCgcguagaugUCGAUCgucgcguucacguaGCaGCCGGCGUAGa -3'
miRNA:   3'- -GCGGACG---------AGCUAG--------------UG-CGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 13159 0.66 0.481152
Target:  5'- uCGCUUGCcgCGcgCGCGCaGACaGCGGg -3'
miRNA:   3'- -GCGGACGa-GCuaGUGCGgCUG-CGUCa -5'
28054 5' -58.3 NC_005887.1 + 31177 0.66 0.481152
Target:  5'- gCGCCacuugUGCUCGggCAUGCgCG-CGUAGa -3'
miRNA:   3'- -GCGG-----ACGAGCuaGUGCG-GCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 5160 0.66 0.481152
Target:  5'- aCGCCgaGCUgaaGGaCGCcgaGCCGACGCAGg -3'
miRNA:   3'- -GCGGa-CGAg--CUaGUG---CGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 24174 0.66 0.481152
Target:  5'- uCGCCUucCUCGcgaAUCAUGCCGA-GCAGc -3'
miRNA:   3'- -GCGGAc-GAGC---UAGUGCGGCUgCGUCa -5'
28054 5' -58.3 NC_005887.1 + 9873 0.66 0.481152
Target:  5'- uGCCUacuacaacGagaUCGAUCcgcACGCCG-CGCAGUg -3'
miRNA:   3'- gCGGA--------Cg--AGCUAG---UGCGGCuGCGUCA- -5'
28054 5' -58.3 NC_005887.1 + 1131 0.66 0.481152
Target:  5'- uGUCgaGCUCGGUCACGggcacgaCGACGCGc- -3'
miRNA:   3'- gCGGa-CGAGCUAGUGCg------GCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 10477 0.66 0.471035
Target:  5'- gGCCgGCgCGAUCACGCuCGAC-UGGUc -3'
miRNA:   3'- gCGGaCGaGCUAGUGCG-GCUGcGUCA- -5'
28054 5' -58.3 NC_005887.1 + 30058 0.66 0.471035
Target:  5'- gCGCCaGCUCcAUCACcuugccgaGCUGGCGCAuGUa -3'
miRNA:   3'- -GCGGaCGAGcUAGUG--------CGGCUGCGU-CA- -5'
28054 5' -58.3 NC_005887.1 + 14753 0.66 0.461028
Target:  5'- gCGCCUucgacacgacGCUCGAcggCGCGCUcGCGCuGUa -3'
miRNA:   3'- -GCGGA----------CGAGCUa--GUGCGGcUGCGuCA- -5'
28054 5' -58.3 NC_005887.1 + 986 0.66 0.461028
Target:  5'- gGUCUGCUCGAacgcuUCcCGgCGGCGCGc- -3'
miRNA:   3'- gCGGACGAGCU-----AGuGCgGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 3275 0.66 0.461028
Target:  5'- uCGCC-GCgauggauuccaUGAUCACGCCGgcgACGCAGc -3'
miRNA:   3'- -GCGGaCGa----------GCUAGUGCGGC---UGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 37456 0.66 0.461028
Target:  5'- uGCCUGCgCGGUUugcaguGCGCCgGAUGCGa- -3'
miRNA:   3'- gCGGACGaGCUAG------UGCGG-CUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 4621 0.66 0.461028
Target:  5'- uCGCCgcgGCgcCGGUgGcCGCCGGCGCGa- -3'
miRNA:   3'- -GCGGa--CGa-GCUAgU-GCGGCUGCGUca -5'
28054 5' -58.3 NC_005887.1 + 14026 0.66 0.461028
Target:  5'- cCGCCgg--CGcgC-CGCCGGCGCAGc -3'
miRNA:   3'- -GCGGacgaGCuaGuGCGGCUGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 33219 0.66 0.461028
Target:  5'- cCGCaCUGgcaCUCGGUCGCGCCG-UGCu-- -3'
miRNA:   3'- -GCG-GAC---GAGCUAGUGCGGCuGCGuca -5'
28054 5' -58.3 NC_005887.1 + 23408 0.66 0.451133
Target:  5'- aGCCUGCagcagcgcgUCGAUCA-GCuCGuCGCAGc -3'
miRNA:   3'- gCGGACG---------AGCUAGUgCG-GCuGCGUCa -5'
28054 5' -58.3 NC_005887.1 + 35483 0.66 0.451133
Target:  5'- gCGCCUGCgCG--UugGCCGACGUcgcgaGGUc -3'
miRNA:   3'- -GCGGACGaGCuaGugCGGCUGCG-----UCA- -5'
28054 5' -58.3 NC_005887.1 + 27619 0.66 0.451133
Target:  5'- uCGCUUuCUCGAUCGuCGCCuGCGCGa- -3'
miRNA:   3'- -GCGGAcGAGCUAGU-GCGGcUGCGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.