miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 38549 0.66 0.334135
Target:  5'- uGCGaaagcCGCUguucugcacGAUGCGGU-CGCGGCCCu -3'
miRNA:   3'- gCGCc----GCGA---------CUACGCCGcGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30995 0.66 0.334135
Target:  5'- uCGgGGUGCgucucucgcgUGgcGCGGCGCA-GGCCa -3'
miRNA:   3'- -GCgCCGCG----------ACuaCGCCGCGUgUCGGg -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 23946 0.66 0.334135
Target:  5'- uCGCGGCGUc--UGCGcaCGCACcgacgaccucGGCCCa -3'
miRNA:   3'- -GCGCCGCGacuACGCc-GCGUG----------UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 30306 0.66 0.329409
Target:  5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3'
miRNA:   3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5'
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 34968 0.66 0.326286
Target:  5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3'
miRNA:   3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 4755 0.66 0.326286
Target:  5'- gGCGGUGCUuuUGCGacgaGCGCGggaagcugacgcCAGCCg -3'
miRNA:   3'- gCGCCGCGAcuACGC----CGCGU------------GUCGGg -5'
28055 5' -61.9 NC_005887.1 + 14826 0.66 0.318574
Target:  5'- cCGCGaCGCUGAUgGCGG-GCAC-GUUCg -3'
miRNA:   3'- -GCGCcGCGACUA-CGCCgCGUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37746 0.66 0.318574
Target:  5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3'
miRNA:   3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 37077 0.66 0.318574
Target:  5'- uGaCGGCGUUcgcaccGAaGCGGgcgaGCACAGCCUc -3'
miRNA:   3'- gC-GCCGCGA------CUaCGCCg---CGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 40015 0.66 0.318574
Target:  5'- uCGCGGUGCgcaucaUGgcGCGGCucgaggcgGC-CGGCCUa -3'
miRNA:   3'- -GCGCCGCG------ACuaCGCCG--------CGuGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29617 0.66 0.311001
Target:  5'- gCGCGGCGC-GAU-CGaGCGCAUucuGCUg -3'
miRNA:   3'- -GCGCCGCGaCUAcGC-CGCGUGu--CGGg -5'
28055 5' -61.9 NC_005887.1 + 29878 0.66 0.311001
Target:  5'- uGCGGCagGCcGAgcguaCGGCGUuucuucACGGCCCa -3'
miRNA:   3'- gCGCCG--CGaCUac---GCCGCG------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 4684 0.66 0.311001
Target:  5'- aGaCGGCGaggguCUGAUG-GGCGCGCcgaucAGCCg -3'
miRNA:   3'- gC-GCCGC-----GACUACgCCGCGUG-----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 28547 0.66 0.303564
Target:  5'- gCGCcgGGCuGCUGAauuUGUaGGCGuCGCcGCCCg -3'
miRNA:   3'- -GCG--CCG-CGACU---ACG-CCGC-GUGuCGGG- -5'
28055 5' -61.9 NC_005887.1 + 11097 0.66 0.303564
Target:  5'- gCGUGGCGCaucggcUGGUGC-GCGCGaagcuGGCCg -3'
miRNA:   3'- -GCGCCGCG------ACUACGcCGCGUg----UCGGg -5'
28055 5' -61.9 NC_005887.1 + 30956 0.66 0.299169
Target:  5'- gGCGGCGCcGGccgccagcgcuccgGCuGCGCugAcGCCCg -3'
miRNA:   3'- gCGCCGCGaCUa-------------CGcCGCGugU-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.