miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 5' -61.9 NC_005887.1 + 38549 0.66 0.334135
Target:  5'- uGCGaaagcCGCUguucugcacGAUGCGGU-CGCGGCCCu -3'
miRNA:   3'- gCGCc----GCGA---------CUACGCCGcGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 13779 0.67 0.262473
Target:  5'- cCGCGuccGCGCaGcggGCGGCGacgccuacaaauucaGCAGCCCg -3'
miRNA:   3'- -GCGC---CGCGaCua-CGCCGCg--------------UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 31767 0.67 0.259857
Target:  5'- aCGCGcuuugucuuuccuuGCGCUGucccguuUGCGGCGC-CGGCg- -3'
miRNA:   3'- -GCGC--------------CGCGACu------ACGCCGCGuGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 14156 1.11 0.000104
Target:  5'- gCGCGGCGCUGAUGCGGCGCACAGCCCg -3'
miRNA:   3'- -GCGCCGCGACUACGCCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 795 0.66 0.326286
Target:  5'- -uCGGCGCUGGcugacuucGCGuGCGCGCcgAGCgCCu -3'
miRNA:   3'- gcGCCGCGACUa-------CGC-CGCGUG--UCG-GG- -5'
28055 5' -61.9 NC_005887.1 + 34968 0.66 0.326286
Target:  5'- uCGuCGGCgaGCUGAacGCGGCGUugucgucggucuGCAGCgCg -3'
miRNA:   3'- -GC-GCCG--CGACUa-CGCCGCG------------UGUCGgG- -5'
28055 5' -61.9 NC_005887.1 + 2169 0.66 0.318574
Target:  5'- gGCGGCGauucccuucGUGCcGuCGCGCAGCUCa -3'
miRNA:   3'- gCGCCGCgac------UACGcC-GCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 29617 0.66 0.311001
Target:  5'- gCGCGGCGC-GAU-CGaGCGCAUucuGCUg -3'
miRNA:   3'- -GCGCCGCGaCUAcGC-CGCGUGu--CGGg -5'
28055 5' -61.9 NC_005887.1 + 29168 0.66 0.294103
Target:  5'- gGCGGCcuGCUcGAccgcucccgcugucUGCGcGCGCGCGGCa- -3'
miRNA:   3'- gCGCCG--CGA-CU--------------ACGC-CGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 24723 0.67 0.268436
Target:  5'- -aCGGCGCUGAccGUcGUGCGCAGCg- -3'
miRNA:   3'- gcGCCGCGACUa-CGcCGCGUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 2506 0.67 0.27519
Target:  5'- aGCGGuCGaUUGAUGU-GCGacgGCGGCCCg -3'
miRNA:   3'- gCGCC-GC-GACUACGcCGCg--UGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 1417 0.66 0.296266
Target:  5'- gCGCucGGCGUUGccgaacucgGUGC-GCGCGCgguAGCCCu -3'
miRNA:   3'- -GCG--CCGCGAC---------UACGcCGCGUG---UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 32524 0.66 0.334135
Target:  5'- gGCcGCGCUGAccggcUGCGacGCGUucGCgGGCCCa -3'
miRNA:   3'- gCGcCGCGACU-----ACGC--CGCG--UG-UCGGG- -5'
28055 5' -61.9 NC_005887.1 + 18685 0.67 0.271122
Target:  5'- uCGCGcGCGCcgGAUuaucuccgacaaucaGC-GCGUACAGCCUg -3'
miRNA:   3'- -GCGC-CGCGa-CUA---------------CGcCGCGUGUCGGG- -5'
28055 5' -61.9 NC_005887.1 + 23935 0.66 0.334135
Target:  5'- aGCGucGUGCUGAcGaCGGCGcCGCGGCg- -3'
miRNA:   3'- gCGC--CGCGACUaC-GCCGC-GUGUCGgg -5'
28055 5' -61.9 NC_005887.1 + 30956 0.66 0.299169
Target:  5'- gGCGGCGCcGGccgccagcgcuccgGCuGCGCugAcGCCCg -3'
miRNA:   3'- gCGCCGCGaCUa-------------CGcCGCGugU-CGGG- -5'
28055 5' -61.9 NC_005887.1 + 37204 0.67 0.268436
Target:  5'- aGCGGCGCgccGAcGUcgGGCaGCGCGGUCa -3'
miRNA:   3'- gCGCCGCGa--CUaCG--CCG-CGUGUCGGg -5'
28055 5' -61.9 NC_005887.1 + 28711 0.67 0.261817
Target:  5'- aCGuCGGUGCUGcucggcugaGUGCGGCcgccgcgcgccGCGCuGCCa -3'
miRNA:   3'- -GC-GCCGCGAC---------UACGCCG-----------CGUGuCGGg -5'
28055 5' -61.9 NC_005887.1 + 30306 0.66 0.329409
Target:  5'- gCGCGGCGcCUGuguuGUcuucgacgguugcgaGCGGCGUGCGuGCgCCg -3'
miRNA:   3'- -GCGCCGC-GAC----UA---------------CGCCGCGUGU-CG-GG- -5'
28055 5' -61.9 NC_005887.1 + 37746 0.66 0.318574
Target:  5'- cCGCGGCGagcauCUGuUGCaucUGCGCGGCCUg -3'
miRNA:   3'- -GCGCCGC-----GACuACGcc-GCGUGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.