miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 5' -54.3 NC_005887.1 + 41410 0.7 0.405528
Target:  5'- cGAUGCCGA--GCAGGUcgaauucUUCCAGCGc- -3'
miRNA:   3'- -CUGCGGCUguUGUCCG-------AAGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 40827 0.72 0.325848
Target:  5'- -uCGUCGACAGCAGGU--CCGGguACg -3'
miRNA:   3'- cuGCGGCUGUUGUCCGaaGGUCguUG- -5'
28056 5' -54.3 NC_005887.1 + 40239 0.66 0.678742
Target:  5'- -gUGCCGAgCGAC-GGCUU-CGGCAAUa -3'
miRNA:   3'- cuGCGGCU-GUUGuCCGAAgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 39933 0.71 0.360168
Target:  5'- -uCGUCGGC-GCGGGCUUcgccucgaagCCAGCGGCa -3'
miRNA:   3'- cuGCGGCUGuUGUCCGAA----------GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 39345 0.67 0.576081
Target:  5'- cGGCGCUGGCcGCAGGCgcgUUgacggacgaagaAGCGACg -3'
miRNA:   3'- -CUGCGGCUGuUGUCCGaa-GG------------UCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 38540 0.66 0.655966
Target:  5'- gGGCGCUuACAccaGCGGGCgccacuggCCGGUGACa -3'
miRNA:   3'- -CUGCGGcUGU---UGUCCGaa------GGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 38010 0.72 0.308826
Target:  5'- cGCGCCGGCGucgaucaguuccuGC-GGCaugUCCGGCAGCu -3'
miRNA:   3'- cUGCGGCUGU-------------UGuCCGa--AGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 37726 0.67 0.610217
Target:  5'- cGCGCCGGCGGCcaccGGCg-CC-GCGGCg -3'
miRNA:   3'- cUGCGGCUGUUGu---CCGaaGGuCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 36754 0.68 0.531301
Target:  5'- cGAUGCCGcGCGGCAGGUU-CCAaaGGCg -3'
miRNA:   3'- -CUGCGGC-UGUUGUCCGAaGGUcgUUG- -5'
28056 5' -54.3 NC_005887.1 + 36530 0.67 0.610217
Target:  5'- --gGgCGGCGGCAGGUauuucgcgaaUUCCGGCAGg -3'
miRNA:   3'- cugCgGCUGUUGUCCG----------AAGGUCGUUg -5'
28056 5' -54.3 NC_005887.1 + 35362 0.72 0.317657
Target:  5'- cACGcCCGGCAccacGCGGGCcUgCAGCAGCu -3'
miRNA:   3'- cUGC-GGCUGU----UGUCCGaAgGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 35064 0.66 0.678742
Target:  5'- cGACGaCCcACAGCGGGCggCCGGgGc- -3'
miRNA:   3'- -CUGC-GGcUGUUGUCCGaaGGUCgUug -5'
28056 5' -54.3 NC_005887.1 + 34654 0.66 0.644536
Target:  5'- cGCGCCGGCuuGCcGGUUUCCGGa--- -3'
miRNA:   3'- cUGCGGCUGu-UGuCCGAAGGUCguug -5'
28056 5' -54.3 NC_005887.1 + 33483 0.69 0.477239
Target:  5'- cGGCGUCGcgaucuCGACGGGCgcgCCGGCGu- -3'
miRNA:   3'- -CUGCGGCu-----GUUGUCCGaa-GGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 32581 0.72 0.307241
Target:  5'- cAUGCCGAuCAGCAGGCUgucggacuccaccaUCCAcGCAAg -3'
miRNA:   3'- cUGCGGCU-GUUGUCCGA--------------AGGU-CGUUg -5'
28056 5' -54.3 NC_005887.1 + 32420 0.72 0.301741
Target:  5'- cGugGCCGGCGGCGauGUggCCGGCGGCg -3'
miRNA:   3'- -CugCGGCUGUUGUc-CGaaGGUCGUUG- -5'
28056 5' -54.3 NC_005887.1 + 32051 0.67 0.580612
Target:  5'- cGACGCCcgcagacggaaacggGACAcacccAUAGGCguagUCCAGCGc- -3'
miRNA:   3'- -CUGCGG---------------CUGU-----UGUCCGa---AGGUCGUug -5'
28056 5' -54.3 NC_005887.1 + 30958 0.71 0.369133
Target:  5'- cGGCGCCGGCcgcCAGcGCU-CCGGCuGCg -3'
miRNA:   3'- -CUGCGGCUGuu-GUC-CGAaGGUCGuUG- -5'
28056 5' -54.3 NC_005887.1 + 30218 0.67 0.626227
Target:  5'- uGGCGCgCGACGGCGGccugcucguccuggcGCUUCUGcGCGGCc -3'
miRNA:   3'- -CUGCG-GCUGUUGUC---------------CGAAGGU-CGUUG- -5'
28056 5' -54.3 NC_005887.1 + 30032 0.7 0.43602
Target:  5'- cGCGCCGACGccacccucAUAGGCgagcgCCAGCu-- -3'
miRNA:   3'- cUGCGGCUGU--------UGUCCGaa---GGUCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.