miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 26678 0.66 0.745398
Target:  5'- cGGCGGUGA-GCUgguCGAGcUCGGCGc -3'
miRNA:   3'- cCCGCCGCUgCGGau-GUUUaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 1628 0.69 0.543134
Target:  5'- cGGGCGGCGAccucgaaguCGUCUuCGA--UCGGCu -3'
miRNA:   3'- -CCCGCCGCU---------GCGGAuGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 35806 0.72 0.407679
Target:  5'- -cGCGGCGACaGCCccgUGAAUUCGGCGg -3'
miRNA:   3'- ccCGCCGCUG-CGGau-GUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 13793 1.12 0.000692
Target:  5'- cGGGCGGCGACGCCUACAAAUUCAGCAg -3'
miRNA:   3'- -CCCGCCGCUGCGGAUGUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 30154 0.66 0.723591
Target:  5'- cGGcGCGGCGcuguccuucGCgGUCUGCAuGUUCuGCAg -3'
miRNA:   3'- -CC-CGCCGC---------UG-CGGAUGUuUAAGuCGU- -5'
28057 5' -53.4 NC_005887.1 + 27427 0.66 0.723591
Target:  5'- -cGCGGCGuGCGUCgaucGCGAGUgauugCAGCGg -3'
miRNA:   3'- ccCGCCGC-UGCGGa---UGUUUAa----GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 41821 0.67 0.701395
Target:  5'- cGGCGcGCGGCgGCCgACGcGUUCAGa- -3'
miRNA:   3'- cCCGC-CGCUG-CGGaUGUuUAAGUCgu -5'
28057 5' -53.4 NC_005887.1 + 29040 0.67 0.700276
Target:  5'- cGGcCGGCGuugccgaACGCCUGgcCGAucugGUUCAGCGc -3'
miRNA:   3'- cCC-GCCGC-------UGCGGAU--GUU----UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 18927 0.68 0.638018
Target:  5'- cGGGCGGCugcgacgagcugaucGACGCgCUGCug---CGGCu -3'
miRNA:   3'- -CCCGCCG---------------CUGCG-GAUGuuuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 34938 0.69 0.553141
Target:  5'- aGGCGGCGGCGggugcgaCCgugGCGAucgucgUCGGCGa -3'
miRNA:   3'- cCCGCCGCUGC-------GGa--UGUUua----AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 29800 0.68 0.599318
Target:  5'- cGGCGGCcgucGACGCCacguccUugAAGUugUCGGCGa -3'
miRNA:   3'- cCCGCCG----CUGCGG------AugUUUA--AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 16709 0.67 0.656233
Target:  5'- uGGCGGUGAagcucaaCCUGCAca-UCAGCAu -3'
miRNA:   3'- cCCGCCGCUgc-----GGAUGUuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 41941 0.66 0.745398
Target:  5'- cGGGCGGCGcggcGCGUCUucg----CGGCGc -3'
miRNA:   3'- -CCCGCCGC----UGCGGAuguuuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 39441 0.69 0.563201
Target:  5'- uGGCGGCGGCGUCguucg---CGGCGg -3'
miRNA:   3'- cCCGCCGCUGCGGauguuuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 31155 0.66 0.73455
Target:  5'- cGGCGaCGAaGCCUAgAuGUUCAGCc -3'
miRNA:   3'- cCCGCcGCUgCGGAUgUuUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 2030 0.67 0.656233
Target:  5'- cGGCGGCGaACGUCU------UCGGCAu -3'
miRNA:   3'- cCCGCCGC-UGCGGAuguuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 28332 0.69 0.554256
Target:  5'- cGGCGGCG-CGCCggcgguUGCGGAggcgcgCGGCGc -3'
miRNA:   3'- cCCGCCGCuGCGG------AUGUUUaa----GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 25839 0.7 0.509164
Target:  5'- cGGCGGCGACgcgaucgGCCUGCGAcaUC-GCc -3'
miRNA:   3'- cCCGCCGCUG-------CGGAUGUUuaAGuCGu -5'
28057 5' -53.4 NC_005887.1 + 27122 0.66 0.733458
Target:  5'- cGGGCcgccguuguagucGGCGAucauCGCCUGCAGGUUgCcGCc -3'
miRNA:   3'- -CCCG-------------CCGCU----GCGGAUGUUUAA-GuCGu -5'
28057 5' -53.4 NC_005887.1 + 12305 0.66 0.723591
Target:  5'- uGGaGCuGGCGcuCGCCUAUGAGgguggcgUCGGCGc -3'
miRNA:   3'- -CC-CG-CCGCu-GCGGAUGUUUa------AGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.