Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 41780 | 0.71 | 0.300384 |
Target: 5'- gUCGU-GCCGaCGugGGUCGCguucaUGCCa -3' miRNA: 3'- aAGCAuCGGCaGCugCCAGCG-----AUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 41271 | 0.67 | 0.521021 |
Target: 5'- -aUGgcGCCGUCGAccugcgcaCGGgcgCGCUGCUg -3' miRNA: 3'- aaGCauCGGCAGCU--------GCCa--GCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 40749 | 0.66 | 0.606975 |
Target: 5'- --gGUAGUgCGUUGGCGGUucgaggcCGCcACCCa -3' miRNA: 3'- aagCAUCG-GCAGCUGCCA-------GCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 40278 | 0.7 | 0.365282 |
Target: 5'- -cCGgcuuGCCGUCGACGacgaacccguaGUCGUUGCCg -3' miRNA: 3'- aaGCau--CGGCAGCUGC-----------CAGCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 38234 | 0.69 | 0.439237 |
Target: 5'- -gCGUGGCCGg-GAUGGUCGagcGCUCg -3' miRNA: 3'- aaGCAUCGGCagCUGCCAGCga-UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 36927 | 0.74 | 0.220305 |
Target: 5'- -gCGUGGUCG-CGcCGGUCGCUgcggcgccGCCCg -3' miRNA: 3'- aaGCAUCGGCaGCuGCCAGCGA--------UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 35723 | 0.68 | 0.44907 |
Target: 5'- -gCGUgcAGCUcgGUCG-CGGUCGUgGCCCa -3' miRNA: 3'- aaGCA--UCGG--CAGCuGCCAGCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 35084 | 0.74 | 0.214526 |
Target: 5'- -cCGgGGCCGaugUCG-CGGUCGCUGCCg -3' miRNA: 3'- aaGCaUCGGC---AGCuGCCAGCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 34748 | 0.67 | 0.553234 |
Target: 5'- cUUCGaAGCCGUCGAaguccuucaGGUCGCcguUCUg -3' miRNA: 3'- -AAGCaUCGGCAGCUg--------CCAGCGau-GGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 33707 | 0.72 | 0.292928 |
Target: 5'- uUUCGUGGCg--CGGCGGUCGauCUGCUCg -3' miRNA: 3'- -AAGCAUCGgcaGCUGCCAGC--GAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 33656 | 0.66 | 0.608081 |
Target: 5'- -----cGCCG-CGGCGGaUCGCcggGCCCu -3' miRNA: 3'- aagcauCGGCaGCUGCC-AGCGa--UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 33630 | 0.72 | 0.278451 |
Target: 5'- cUUCGUGGCCG-CGACGaagCGCUuACCg -3' miRNA: 3'- -AAGCAUCGGCaGCUGCca-GCGA-UGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 32254 | 0.67 | 0.531683 |
Target: 5'- ---cUGGCCGUCGGCGcGg-GCcGCCCa -3' miRNA: 3'- aagcAUCGGCAGCUGC-CagCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 32121 | 0.69 | 0.410494 |
Target: 5'- gUCGauccAGUCGUCGACaG-CGCUGCUCg -3' miRNA: 3'- aAGCa---UCGGCAGCUGcCaGCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 31021 | 0.72 | 0.285617 |
Target: 5'- -gCGUaccGGCCGUCGcgguuGCGGcgcUCGCUGCCg -3' miRNA: 3'- aaGCA---UCGGCAGC-----UGCC---AGCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 29496 | 0.66 | 0.564109 |
Target: 5'- gUCGUAGCCGgcggccUCGACGGcgggCGCgUugUa -3' miRNA: 3'- aAGCAUCGGC------AGCUGCCa---GCG-AugGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 28714 | 0.67 | 0.510443 |
Target: 5'- gUCGUAGUCGUCGAaCGacacgcgcgCGCUAUCg -3' miRNA: 3'- aAGCAUCGGCAGCU-GCca-------GCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 27819 | 0.67 | 0.542423 |
Target: 5'- aUCGacgcGCCGcCGACGGcCGC-GCCUg -3' miRNA: 3'- aAGCau--CGGCaGCUGCCaGCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 26938 | 0.75 | 0.168167 |
Target: 5'- -aCGUAuGCgCGUCGACGaucCGCUGCCCg -3' miRNA: 3'- aaGCAU-CG-GCAGCUGCca-GCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 25556 | 0.66 | 0.608081 |
Target: 5'- gUUCGUAGCUGcuUCcGCGuG-CGCUGCCa -3' miRNA: 3'- -AAGCAUCGGC--AGcUGC-CaGCGAUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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