miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28075 3' -58.5 NC_005887.1 + 13626 0.66 0.471913
Target:  5'- gGCGCGCGGCgGCCGcacucagccGAGCaGCACc -3'
miRNA:   3'- gUGCGCGCUG-UGGCca-------CUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 32741 0.66 0.461861
Target:  5'- --aGCGCGGCGCuCGcGUGcGCgccgGCGCGc -3'
miRNA:   3'- gugCGCGCUGUG-GC-CACuCGa---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40924 0.66 0.461861
Target:  5'- cCGCGCGCG-CACCGaGUucggcaacgccGAGC-GCAUg -3'
miRNA:   3'- -GUGCGCGCuGUGGC-CA-----------CUCGaCGUGu -5'
28075 3' -58.5 NC_005887.1 + 41672 0.66 0.461861
Target:  5'- gUugGCGagccgGACGaaGGUagcGAGCUGCGCGa -3'
miRNA:   3'- -GugCGCg----CUGUggCCA---CUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 2914 0.66 0.461861
Target:  5'- -cCGCGaaCGACGCCGccgccaAGCUGCGCAa -3'
miRNA:   3'- guGCGC--GCUGUGGCcac---UCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 29306 0.66 0.458867
Target:  5'- gUACGCgGCGACGCUGGccguguggaucugcUcGAGCUGCuuCAc -3'
miRNA:   3'- -GUGCG-CGCUGUGGCC--------------A-CUCGACGu-GU- -5'
28075 3' -58.5 NC_005887.1 + 22659 0.66 0.451922
Target:  5'- gGCGCGCauuGAUauugcaucgGCCGGUGGGC-GCAa- -3'
miRNA:   3'- gUGCGCG---CUG---------UGGCCACUCGaCGUgu -5'
28075 3' -58.5 NC_005887.1 + 416 0.66 0.442102
Target:  5'- gACGCGCcGCGCCGcccgcUGuuGCUGCGCu -3'
miRNA:   3'- gUGCGCGcUGUGGCc----ACu-CGACGUGu -5'
28075 3' -58.5 NC_005887.1 + 11056 0.66 0.442102
Target:  5'- uGCGC-CGAUGCCGGUcGAGCUcgACGa -3'
miRNA:   3'- gUGCGcGCUGUGGCCA-CUCGAcgUGU- -5'
28075 3' -58.5 NC_005887.1 + 30219 0.66 0.442102
Target:  5'- gGCGCGCGACGgCGGccugcucguccUGGcGCUucuGCGCGg -3'
miRNA:   3'- gUGCGCGCUGUgGCC-----------ACU-CGA---CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 9652 0.66 0.442102
Target:  5'- -cCGCGCGGCuauCC-GUGcGCUGUACGc -3'
miRNA:   3'- guGCGCGCUGu--GGcCACuCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 40053 0.66 0.436268
Target:  5'- cUACGCcCGAUACCGuuccgaucguccggcGgggcgGGGCUGCACAu -3'
miRNA:   3'- -GUGCGcGCUGUGGC---------------Ca----CUCGACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 24380 0.66 0.432403
Target:  5'- --gGUGCGGCcgauGCCGGcGAGCccGCGCAu -3'
miRNA:   3'- gugCGCGCUG----UGGCCaCUCGa-CGUGU- -5'
28075 3' -58.5 NC_005887.1 + 321 0.67 0.42283
Target:  5'- uGCGCGCGuACACCGaG-GAagUGCGCGa -3'
miRNA:   3'- gUGCGCGC-UGUGGC-CaCUcgACGUGU- -5'
28075 3' -58.5 NC_005887.1 + 7596 0.67 0.42283
Target:  5'- uCGCGUaaGCGGCGCCGGUugaucgauGGGCgGCGa- -3'
miRNA:   3'- -GUGCG--CGCUGUGGCCA--------CUCGaCGUgu -5'
28075 3' -58.5 NC_005887.1 + 18535 0.67 0.42283
Target:  5'- aCACGgGCGuucUCGGUGGGCggcgGCGCc -3'
miRNA:   3'- -GUGCgCGCuguGGCCACUCGa---CGUGu -5'
28075 3' -58.5 NC_005887.1 + 27540 0.67 0.42188
Target:  5'- uCAUGgGCGGCGCUccaucauGGUGuGCaGCACGc -3'
miRNA:   3'- -GUGCgCGCUGUGG-------CCACuCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 2700 0.67 0.413386
Target:  5'- gUACGgGCGGCAagCGGccGAGCcGCGCGa -3'
miRNA:   3'- -GUGCgCGCUGUg-GCCa-CUCGaCGUGU- -5'
28075 3' -58.5 NC_005887.1 + 12601 0.67 0.413386
Target:  5'- gGC-CGCGACGCuCGGcGuGCUGaCGCAg -3'
miRNA:   3'- gUGcGCGCUGUG-GCCaCuCGAC-GUGU- -5'
28075 3' -58.5 NC_005887.1 + 16697 0.67 0.404072
Target:  5'- aCGCGCuGCGGCuggCGGUGAaGCucaaccUGCACAu -3'
miRNA:   3'- -GUGCG-CGCUGug-GCCACU-CG------ACGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.