miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28076 5' -53.8 NC_005887.1 + 312 0.66 0.751174
Target:  5'- aGGCCGCggUGCGcgcguacaccgaggaAGUGCGCGA---GCCGu -3'
miRNA:   3'- -CCGGCG--AUGC---------------UUACGUGCUucgUGGC- -5'
28076 5' -53.8 NC_005887.1 + 39841 0.66 0.746916
Target:  5'- uGCgGCagucCGggUGCACG-AGCagGCCGg -3'
miRNA:   3'- cCGgCGau--GCuuACGUGCuUCG--UGGC- -5'
28076 5' -53.8 NC_005887.1 + 12720 0.66 0.746916
Target:  5'- uGGUCGCgcagcaGCaGAAUGCGCucGAucGCGCCGc -3'
miRNA:   3'- -CCGGCGa-----UG-CUUACGUG--CUu-CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 2661 0.66 0.746916
Target:  5'- uGGgCGCggGCGA--GCAC-AAGCACCu -3'
miRNA:   3'- -CCgGCGa-UGCUuaCGUGcUUCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 2528 0.66 0.746916
Target:  5'- uGCCGC-ACGc-UGCGCaAGGCGCUGu -3'
miRNA:   3'- cCGGCGaUGCuuACGUGcUUCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 1510 0.66 0.746916
Target:  5'- cGCCGgUGgaucCGAcUGCACGAAGauCACCu -3'
miRNA:   3'- cCGGCgAU----GCUuACGUGCUUC--GUGGc -5'
28076 5' -53.8 NC_005887.1 + 14644 0.66 0.746916
Target:  5'- cGCCGU--CGAGUGCuacgcgGCGAGGUACgGc -3'
miRNA:   3'- cCGGCGauGCUUACG------UGCUUCGUGgC- -5'
28076 5' -53.8 NC_005887.1 + 35099 0.66 0.746916
Target:  5'- cGGUCGCUGcCGAGgucgaugauauUGguCGAuGCGCCc -3'
miRNA:   3'- -CCGGCGAU-GCUU-----------ACguGCUuCGUGGc -5'
28076 5' -53.8 NC_005887.1 + 27483 0.66 0.746916
Target:  5'- uGCCGC-GCG-GUGCGCGcuguuGCugCGg -3'
miRNA:   3'- cCGGCGaUGCuUACGUGCuu---CGugGC- -5'
28076 5' -53.8 NC_005887.1 + 6106 0.66 0.746916
Target:  5'- cGGCCGCgcACGAGcUG-GCGAAGUgguGCCu -3'
miRNA:   3'- -CCGGCGa-UGCUU-ACgUGCUUCG---UGGc -5'
28076 5' -53.8 NC_005887.1 + 39784 0.66 0.746916
Target:  5'- cGCCGCUcACGGccAUGCGgCGgAAGCaguaGCCGc -3'
miRNA:   3'- cCGGCGA-UGCU--UACGU-GC-UUCG----UGGC- -5'
28076 5' -53.8 NC_005887.1 + 7978 0.66 0.746916
Target:  5'- cGGCCGCcucUGAua-CGCGggGCGCuCGu -3'
miRNA:   3'- -CCGGCGau-GCUuacGUGCuuCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 29864 0.66 0.745848
Target:  5'- cGCCGCUGaauCGAucaGCGCGAgcugagaAGCGCgCGu -3'
miRNA:   3'- cCGGCGAU---GCUua-CGUGCU-------UCGUG-GC- -5'
28076 5' -53.8 NC_005887.1 + 23954 0.66 0.742638
Target:  5'- cGCCGCggcguaggccauCGggUuCGCGA-GCGCCGg -3'
miRNA:   3'- cCGGCGau----------GCuuAcGUGCUuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 31275 0.66 0.737264
Target:  5'- cGGCCGCgucgaucgccucguCGAGcucgaccgGCAuCGgcGCACCGg -3'
miRNA:   3'- -CCGGCGau------------GCUUa-------CGU-GCuuCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 28691 0.66 0.736186
Target:  5'- cGCCGCUgaucGCGuucUGCACGucGGUGCUGc -3'
miRNA:   3'- cCGGCGA----UGCuu-ACGUGCu-UCGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 1796 0.66 0.736186
Target:  5'- cGGCCGCUAccCGAA-GgACGugcCGCCGa -3'
miRNA:   3'- -CCGGCGAU--GCUUaCgUGCuucGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 19047 0.66 0.731862
Target:  5'- gGGCCGCagUGCGGcguuguucuucgGCGCG-GGCugCGg -3'
miRNA:   3'- -CCGGCG--AUGCUua----------CGUGCuUCGugGC- -5'
28076 5' -53.8 NC_005887.1 + 40117 0.66 0.729694
Target:  5'- aGCCGCaggacgccuacagcgUGCG-GUGCGCGcugcGCGCCGc -3'
miRNA:   3'- cCGGCG---------------AUGCuUACGUGCuu--CGUGGC- -5'
28076 5' -53.8 NC_005887.1 + 10030 0.66 0.725345
Target:  5'- cGGCCGCgcug---GCACGAacagcGGCAUCa -3'
miRNA:   3'- -CCGGCGaugcuuaCGUGCU-----UCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.