miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 3' -61.6 NC_005887.1 + 41618 0.66 0.351817
Target:  5'- gCCGgcGCgGCCCGUgaGGaUCuGCUGCGu -3'
miRNA:   3'- gGGCaaCGgCGGGCG--UC-AGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 32835 0.66 0.351817
Target:  5'- -aCGUgaugGCCGCCgUGCAgGUCAaGCgGCAu -3'
miRNA:   3'- ggGCAa---CGGCGG-GCGU-CAGU-CGgCGU- -5'
28079 3' -61.6 NC_005887.1 + 30269 0.66 0.346915
Target:  5'- gCCGUccggcgcgacgaucgUGCCGCgcacgacguUCGCAGUCAGgCCGa- -3'
miRNA:   3'- gGGCA---------------ACGGCG---------GGCGUCAGUC-GGCgu -5'
28079 3' -61.6 NC_005887.1 + 12981 0.66 0.335666
Target:  5'- gCCGagggcaUGCCGCUCGCGG-CuGCCGgGu -3'
miRNA:   3'- gGGCa-----ACGGCGGGCGUCaGuCGGCgU- -5'
28079 3' -61.6 NC_005887.1 + 4231 0.66 0.327795
Target:  5'- -gCG-UGCUGCUCGCGccgacgcUCGGCCGCAc -3'
miRNA:   3'- ggGCaACGGCGGGCGUc------AGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 35613 0.66 0.327016
Target:  5'- gCCGUUGCCGUCCGCAuUUucgauggugaccuGGCCc-- -3'
miRNA:   3'- gGGCAACGGCGGGCGUcAG-------------UCGGcgu -5'
28079 3' -61.6 NC_005887.1 + 25019 0.66 0.327016
Target:  5'- gCCGgcgGCCGCCggccagccgguagCGCAGaaccCAuGCCGCAg -3'
miRNA:   3'- gGGCaa-CGGCGG-------------GCGUCa---GU-CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 15630 0.66 0.326238
Target:  5'- gCCCGgucuaugucgaGCUGCCCGCGGccgcgcgaCGGCUGUAu -3'
miRNA:   3'- -GGGCaa---------CGGCGGGCGUCa-------GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 14179 0.66 0.320062
Target:  5'- gCCCGaUGuuGCUCGacgacCAGUCGGCgUGCGa -3'
miRNA:   3'- -GGGCaACggCGGGC-----GUCAGUCG-GCGU- -5'
28079 3' -61.6 NC_005887.1 + 28570 0.66 0.312467
Target:  5'- -gCGUcGCCGCCCGCuGcgCGGaCGCGg -3'
miRNA:   3'- ggGCAaCGGCGGGCGuCa-GUCgGCGU- -5'
28079 3' -61.6 NC_005887.1 + 41813 0.66 0.312467
Target:  5'- aUCCGgcGCgGCgCGCGG-CGGCCGaCGc -3'
miRNA:   3'- -GGGCaaCGgCGgGCGUCaGUCGGC-GU- -5'
28079 3' -61.6 NC_005887.1 + 6992 0.67 0.305009
Target:  5'- gCCCGcguggUGCCgggcgugaaGCUCGUGGcCGGCCGCc -3'
miRNA:   3'- -GGGCa----ACGG---------CGGGCGUCaGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 3247 0.67 0.305009
Target:  5'- aCCGc-GCCGCUCGCGcugcgcaacuucGUC-GCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGGCGU------------CAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 39325 0.67 0.305009
Target:  5'- gCCGagcaugGCUuuGCCCGCGGcgCuGGCCGCAg -3'
miRNA:   3'- gGGCaa----CGG--CGGGCGUCa-G-UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 4662 0.67 0.305009
Target:  5'- cCCCGgcGUCGCUugcaUGCGGggCGGCUGCu -3'
miRNA:   3'- -GGGCaaCGGCGG----GCGUCa-GUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 35083 0.67 0.297688
Target:  5'- gCCGggGCCGaugUCGCGGUC-GCUGCc -3'
miRNA:   3'- gGGCaaCGGCg--GGCGUCAGuCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 24887 0.67 0.295518
Target:  5'- gCCGaUGCCGCgcgcucggucuucuUCGCAG-CAGCCGgAu -3'
miRNA:   3'- gGGCaACGGCG--------------GGCGUCaGUCGGCgU- -5'
28079 3' -61.6 NC_005887.1 + 5432 0.67 0.283457
Target:  5'- aCCGgcgcgaccacGCCGCCCGCuGgcacuccuGCCGCAu -3'
miRNA:   3'- gGGCaa--------CGGCGGGCGuCagu-----CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 11407 0.67 0.283457
Target:  5'- gCCGgcGCCGCCaagGCAucGUCugagcgccaacaGGCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGg--CGU--CAG------------UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 18641 0.67 0.276546
Target:  5'- gCCCGcUGCUGUCgaCGCuGUucCAGCCGCu -3'
miRNA:   3'- -GGGCaACGGCGG--GCGuCA--GUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.