miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28088 5' -55.4 NC_005887.1 + 21195 0.66 0.674281
Target:  5'- gGCAuCGAaaACGCC-GUCGGAuuggcacuagcAUUCGUGg -3'
miRNA:   3'- gCGU-GCU--UGCGGaCGGCCU-----------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 817 0.66 0.674281
Target:  5'- gCGCGcCGAGCGCCU-CgCGGAucUUGCc -3'
miRNA:   3'- -GCGU-GCUUGCGGAcG-GCCUuaAGCGc -5'
28088 5' -55.4 NC_005887.1 + 30871 0.66 0.663208
Target:  5'- uGCGCGuagaccUGCuCUGCCuGAuuGUUCGCGa -3'
miRNA:   3'- gCGUGCuu----GCG-GACGGcCU--UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 38218 0.66 0.663208
Target:  5'- uCGCGCGcagccuuGCGCgUgGCCGGGAUggucgagCGCu -3'
miRNA:   3'- -GCGUGCu------UGCGgA-CGGCCUUAa------GCGc -5'
28088 5' -55.4 NC_005887.1 + 24207 0.66 0.658771
Target:  5'- gGCACGAcgucggcggcccGCGCUUcGCCGGuugcguacagCGCGu -3'
miRNA:   3'- gCGUGCU------------UGCGGA-CGGCCuuaa------GCGC- -5'
28088 5' -55.4 NC_005887.1 + 5049 0.66 0.652107
Target:  5'- gGCACGgcaAugGCCgcGCCGGAAgaucagccCGCa -3'
miRNA:   3'- gCGUGC---UugCGGa-CGGCCUUaa------GCGc -5'
28088 5' -55.4 NC_005887.1 + 24758 0.66 0.652107
Target:  5'- gCGCGCGAGCGCgggaUUGaCGGGcguGUUCGUc -3'
miRNA:   3'- -GCGUGCUUGCG----GACgGCCU---UAAGCGc -5'
28088 5' -55.4 NC_005887.1 + 16226 0.66 0.652107
Target:  5'- gGuCACGAucgauACGCCgGCCGGcgagCGCa -3'
miRNA:   3'- gC-GUGCU-----UGCGGaCGGCCuuaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 11319 0.66 0.649884
Target:  5'- gGCAgCGAGCGCCgcaaccgcgacgGCCGGua--CGCu -3'
miRNA:   3'- gCGU-GCUUGCGGa-----------CGGCCuuaaGCGc -5'
28088 5' -55.4 NC_005887.1 + 30714 0.66 0.640987
Target:  5'- uGCGCGAGCaGCUUGUCgcgcugcguGGccUUCGCGa -3'
miRNA:   3'- gCGUGCUUG-CGGACGG---------CCuuAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 5136 0.66 0.640987
Target:  5'- gGCAUGAcCGCgCUGCCcGAcgUCgGCGc -3'
miRNA:   3'- gCGUGCUuGCG-GACGGcCUuaAG-CGC- -5'
28088 5' -55.4 NC_005887.1 + 29810 0.66 0.640987
Target:  5'- aGCugGAA-GUCUGCgGGugugCGCGg -3'
miRNA:   3'- gCGugCUUgCGGACGgCCuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 990 0.66 0.640987
Target:  5'- uGCuCGAACGCUUcCCGGcggcgCGCGg -3'
miRNA:   3'- gCGuGCUUGCGGAcGGCCuuaa-GCGC- -5'
28088 5' -55.4 NC_005887.1 + 41349 0.66 0.640987
Target:  5'- aGUACGAuccgcGCGCC-GCCGGGaagcuGUUCGa- -3'
miRNA:   3'- gCGUGCU-----UGCGGaCGGCCU-----UAAGCgc -5'
28088 5' -55.4 NC_005887.1 + 27586 0.66 0.629858
Target:  5'- aGCGCGAGCGCgCcGUCGaGcgUCGUGu -3'
miRNA:   3'- gCGUGCUUGCG-GaCGGCcUuaAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 32506 0.66 0.62652
Target:  5'- gCGCGCGGcguucagguuggccGCGCUgaccgGCUGcGAcgcGUUCGCGg -3'
miRNA:   3'- -GCGUGCU--------------UGCGGa----CGGC-CU---UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 4887 0.66 0.618732
Target:  5'- uCGCgACGAugguCGCCgaggGCCGGcgcgagguGUUCGUGc -3'
miRNA:   3'- -GCG-UGCUu---GCGGa---CGGCCu-------UAAGCGC- -5'
28088 5' -55.4 NC_005887.1 + 10702 0.67 0.607618
Target:  5'- gGCGCGAugcugacugGCuGCuCUGCCGGGAUggaaagUgGCGg -3'
miRNA:   3'- gCGUGCU---------UG-CG-GACGGCCUUA------AgCGC- -5'
28088 5' -55.4 NC_005887.1 + 14937 0.67 0.607618
Target:  5'- aCGCACGccGCGCgCUGCCGuacgaCGCGc -3'
miRNA:   3'- -GCGUGCu-UGCG-GACGGCcuuaaGCGC- -5'
28088 5' -55.4 NC_005887.1 + 26114 0.67 0.607618
Target:  5'- cCGUGCGcuCGCCgGCCGGcGUaucgaUCGUGa -3'
miRNA:   3'- -GCGUGCuuGCGGaCGGCCuUA-----AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.