miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 38934 0.68 0.390944
Target:  5'- uGCgUGACAaaGCCGC-CCUGCcaGCGGUa -3'
miRNA:   3'- gCGgAUUGU--UGGCGcGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38267 0.68 0.390944
Target:  5'- uGCCgau---CUGCGCCUGCUugcccgugagcaGCGGCu -3'
miRNA:   3'- gCGGauuguuGGCGCGGGCGA------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 38140 0.72 0.22057
Target:  5'- aCGCCUuuCucCUGCGCgCGCUGCaGCa -3'
miRNA:   3'- -GCGGAuuGuuGGCGCGgGCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 37779 0.68 0.41865
Target:  5'- gCGCCUcGGCGgcuuGCUGCGCCUGCaguuccucguCGGUg -3'
miRNA:   3'- -GCGGA-UUGU----UGGCGCGGGCGau--------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 37445 0.66 0.508347
Target:  5'- gCGCacgAACAcCuCGCGCCgGCccuCGGCg -3'
miRNA:   3'- -GCGga-UUGUuG-GCGCGGgCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 36916 0.73 0.193115
Target:  5'- uGCC-AGCGGgcgcguggUCGCGCCgguCGCUGCGGCg -3'
miRNA:   3'- gCGGaUUGUU--------GGCGCGG---GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 36820 0.78 0.093877
Target:  5'- gCGCagaauCGugCGUGCCUGCUGCGGCc -3'
miRNA:   3'- -GCGgauu-GUugGCGCGGGCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 36451 0.71 0.257836
Target:  5'- uCGCCUGGCGACCGaGCUCGaCguucCGGUc -3'
miRNA:   3'- -GCGGAUUGUUGGCgCGGGC-Gau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 36451 0.67 0.477453
Target:  5'- uGCCcuuCGGCCa-GCCCGCaGCGGUc -3'
miRNA:   3'- gCGGauuGUUGGcgCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35950 0.66 0.508347
Target:  5'- gCGCCUugucGACuuCCGCGUaCGCUuCGaGCa -3'
miRNA:   3'- -GCGGA----UUGuuGGCGCGgGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 35856 0.67 0.486627
Target:  5'- uCGCCUGcggauugcgcucgGCAgacaccgcgacGCCGCGCCCGUacuucaGGUc -3'
miRNA:   3'- -GCGGAU-------------UGU-----------UGGCGCGGGCGaug---CCG- -5'
28090 5' -57.5 NC_005887.1 + 35380 0.78 0.096586
Target:  5'- gGCCUGcaGCAGCUcaugcucgauGCGCCCGCgcACGGCc -3'
miRNA:   3'- gCGGAU--UGUUGG----------CGCGGGCGa-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 35308 0.77 0.114448
Target:  5'- gGCCUucucuGCAucgcuccacuGCCGCGCgCCGCgGCGGCc -3'
miRNA:   3'- gCGGAu----UGU----------UGGCGCG-GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 34696 0.68 0.41865
Target:  5'- aGCagcgGGCGGCCGuCGUCgCGCUuGCGGUg -3'
miRNA:   3'- gCGga--UUGUUGGC-GCGG-GCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 34360 0.66 0.540054
Target:  5'- gGCUggaGACGAgCGC-CCCGCguaucagagUGCGGCc -3'
miRNA:   3'- gCGGa--UUGUUgGCGcGGGCG---------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 34245 0.7 0.323154
Target:  5'- gCGCCUcGGCGAgCGCGgCgaGCUGCGcGCg -3'
miRNA:   3'- -GCGGA-UUGUUgGCGCgGg-CGAUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 33935 0.67 0.487652
Target:  5'- uCGaCCUGcCGACgGCGCUcggcgagcacguCGCgUGCGGCg -3'
miRNA:   3'- -GC-GGAUuGUUGgCGCGG------------GCG-AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33636 0.68 0.43777
Target:  5'- gGCC--GCGACgaaGCGCuuaCCGCcGCGGCg -3'
miRNA:   3'- gCGGauUGUUGg--CGCG---GGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33223 0.69 0.337613
Target:  5'- gGCCUGaauaccgaugcgcuuGCGACCagaguaacggcgccgGUGCCCGCgcUGGCa -3'
miRNA:   3'- gCGGAU---------------UGUUGG---------------CGCGGGCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 33047 0.66 0.529405
Target:  5'- gCGUC-GGCGuuuCgGUGCCCGUaaccUGCGGCg -3'
miRNA:   3'- -GCGGaUUGUu--GgCGCGGGCG----AUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.