Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28092 | 3' | -59.8 | NC_005887.1 | + | 4135 | 1.1 | 0.000184 |
Target: 5'- cCACGCGCAAGGCUGCGCGCGACUGGCu -3' miRNA: 3'- -GUGCGCGUUCCGACGCGCGCUGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 30776 | 0.76 | 0.081006 |
Target: 5'- gCGCGCgGCGAGuuccuuCUGCGCGCGAUcaaUGGCg -3' miRNA: 3'- -GUGCG-CGUUCc-----GACGCGCGCUG---ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 11101 | 0.75 | 0.090764 |
Target: 5'- --gGCGCAucGGCuggUGCGCGCGaaGCUGGCc -3' miRNA: 3'- gugCGCGUu-CCG---ACGCGCGC--UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 15008 | 0.74 | 0.113715 |
Target: 5'- uGCGCGCc--GCUGCGCGUGGCgcagucgacgUGGCc -3' miRNA: 3'- gUGCGCGuucCGACGCGCGCUG----------ACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 41354 | 0.74 | 0.120249 |
Target: 5'- gCGCGCGCAcGGCgGCcggcaauuuGCGCGugUcGGCg -3' miRNA: 3'- -GUGCGCGUuCCGaCG---------CGCGCugA-CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 22605 | 0.74 | 0.104533 |
Target: 5'- uGCGUGUGGaucGCUGCGCGCGucgccuACUGGCa -3' miRNA: 3'- gUGCGCGUUc--CGACGCGCGC------UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 41804 | 0.73 | 0.142001 |
Target: 5'- uCGCGCuGUAuccGGCgcgGCGCGCGGC-GGCc -3' miRNA: 3'- -GUGCG-CGUu--CCGa--CGCGCGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 17398 | 0.73 | 0.127132 |
Target: 5'- cCGCGCGCAAGGCggcccGCGCGCaccGCgucGCg -3' miRNA: 3'- -GUGCGCGUUCCGa----CGCGCGc--UGac-CG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 14695 | 0.73 | 0.130708 |
Target: 5'- cCGCGCGCGcGGCagcucaGCGCGCacaACUGGUa -3' miRNA: 3'- -GUGCGCGUuCCGa-----CGCGCGc--UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 17610 | 0.73 | 0.134377 |
Target: 5'- uCGCGCGCAAGauggaaacGCUGCGCaCGAC-GGUc -3' miRNA: 3'- -GUGCGCGUUC--------CGACGCGcGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 24952 | 0.73 | 0.138141 |
Target: 5'- uGCGCGC-GGGCcgccuUGCGCGCGGCc-GCg -3' miRNA: 3'- gUGCGCGuUCCG-----ACGCGCGCUGacCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 26221 | 0.73 | 0.142001 |
Target: 5'- gUugGCGgGGuGGUUGCGCGCGGCgcaGCg -3' miRNA: 3'- -GugCGCgUU-CCGACGCGCGCUGac-CG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 2631 | 0.73 | 0.142001 |
Target: 5'- aACGCGCGAGGaugagGUG-GCGGCgGGCa -3' miRNA: 3'- gUGCGCGUUCCga---CGCgCGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 27682 | 0.72 | 0.158014 |
Target: 5'- -uCGUGCGGGGCaGCGUcgaaccgGCGACgGGCa -3' miRNA: 3'- guGCGCGUUCCGaCGCG-------CGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 15867 | 0.72 | 0.169121 |
Target: 5'- cCGCGCGCAgcAGGCgcaccagcagcucggUGCGCucgacGCGcaGCUGGCc -3' miRNA: 3'- -GUGCGCGU--UCCG---------------ACGCG-----CGC--UGACCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 41910 | 0.72 | 0.152921 |
Target: 5'- aCACGCGCAgaGGGUUcgagcgcagcaacaGCGgGCGGCgcGGCg -3' miRNA: 3'- -GUGCGCGU--UCCGA--------------CGCgCGCUGa-CCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 38218 | 0.71 | 0.196562 |
Target: 5'- uCGCGCGCAGccUUGCGCGUGGCcGGg -3' miRNA: 3'- -GUGCGCGUUccGACGCGCGCUGaCCg -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 19475 | 0.71 | 0.186341 |
Target: 5'- aGCGCGCGAGGauCUGauaGCGGCcGGCg -3' miRNA: 3'- gUGCGCGUUCC--GACgcgCGCUGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 989 | 0.71 | 0.171889 |
Target: 5'- aCACGCGCAAuugccGGCcgccgUGCGCGCGcuguacACcGGCu -3' miRNA: 3'- -GUGCGCGUU-----CCG-----ACGCGCGC------UGaCCG- -5' |
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28092 | 3' | -59.8 | NC_005887.1 | + | 5723 | 0.71 | 0.181409 |
Target: 5'- gACGCGCAGGaGaagGCGCGCGAU--GCa -3' miRNA: 3'- gUGCGCGUUC-Cga-CGCGCGCUGacCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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