Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28094 | 5' | -49.4 | NC_005887.1 | + | 3218 | 1.08 | 0.003037 |
Target: 5'- gGCCGCUCGAAACCGGACGCAAAUAAAc -3' miRNA: 3'- -CGGCGAGCUUUGGCCUGCGUUUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 26724 | 0.75 | 0.458552 |
Target: 5'- gGCaGCUCGAcauaGACCGGGCGCAc----- -3' miRNA: 3'- -CGgCGAGCU----UUGGCCUGCGUuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 5932 | 0.74 | 0.502021 |
Target: 5'- gGCCGCgcgGAAGgCGGuGCGCAAAUGAAc -3' miRNA: 3'- -CGGCGag-CUUUgGCC-UGCGUUUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 21814 | 0.73 | 0.558704 |
Target: 5'- uCCGCggCGcuGCCGGGCGCGccgAAUGAAa -3' miRNA: 3'- cGGCGa-GCuuUGGCCUGCGU---UUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 4336 | 0.73 | 0.570277 |
Target: 5'- uGCCGCaggaacugaUCGAcGCCGG-CGCGGAUGu- -3' miRNA: 3'- -CGGCG---------AGCUuUGGCCuGCGUUUAUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 30590 | 0.72 | 0.6053 |
Target: 5'- cGUCGCUUcGAGCCGGAuCGCGAGc--- -3' miRNA: 3'- -CGGCGAGcUUUGGCCU-GCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 25025 | 0.72 | 0.617041 |
Target: 5'- gGCCGC-CGGccAGCCGGuaGCGCAGAa--- -3' miRNA: 3'- -CGGCGaGCU--UUGGCC--UGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 19262 | 0.71 | 0.687383 |
Target: 5'- aCCGCUUGguGCCGccGACGCAAGa--- -3' miRNA: 3'- cGGCGAGCuuUGGC--CUGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 4583 | 0.7 | 0.710485 |
Target: 5'- aGCCGC-CGAGGCgcaGGccGCGCAGAUGc- -3' miRNA: 3'- -CGGCGaGCUUUGg--CC--UGCGUUUAUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 9735 | 0.7 | 0.710485 |
Target: 5'- uGCCGCUCGAcgggaagcucguGugCGGGCuGCAcGUGc- -3' miRNA: 3'- -CGGCGAGCU------------UugGCCUG-CGUuUAUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 28574 | 0.7 | 0.733236 |
Target: 5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3' miRNA: 3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 6459 | 0.7 | 0.733236 |
Target: 5'- uCUGUcCGaAGACCGGGCGCAGAUcGAg -3' miRNA: 3'- cGGCGaGC-UUUGGCCUGCGUUUAuUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 14701 | 0.7 | 0.733236 |
Target: 5'- cGUCGCggCGGgcgGGCCGGGCGCGGcgAu- -3' miRNA: 3'- -CGGCGa-GCU---UUGGCCUGCGUUuaUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 13565 | 0.7 | 0.733236 |
Target: 5'- uGCCGCcCGAGcagGCCGacGACGCGAAg--- -3' miRNA: 3'- -CGGCGaGCUU---UGGC--CUGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 24545 | 0.7 | 0.755524 |
Target: 5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3' miRNA: 3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 6053 | 0.69 | 0.765372 |
Target: 5'- cGCCGCgcagaUCGGccAACCGGACgagucgaGCGAGUAc- -3' miRNA: 3'- -CGGCG-----AGCU--UUGGCCUG-------CGUUUAUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 16036 | 0.69 | 0.766459 |
Target: 5'- aGCCGCa-GGAGCCGGuauUGCAGAc--- -3' miRNA: 3'- -CGGCGagCUUUGGCCu--GCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 33656 | 0.69 | 0.776166 |
Target: 5'- cGCCGCggCGGAucGCCGGGCccuGCAccgucgcGAUGAAg -3' miRNA: 3'- -CGGCGa-GCUU--UGGCCUG---CGU-------UUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 7410 | 0.69 | 0.777236 |
Target: 5'- cGCCGaguUCGAAGCCGGcgACgGCAAGUu-- -3' miRNA: 3'- -CGGCg--AGCUUUGGCC--UG-CGUUUAuuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 41373 | 0.68 | 0.818497 |
Target: 5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3' miRNA: 3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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