miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 16202 0.67 0.881692
Target:  5'- gGCCGCgcugCGA--CCGGAcaCGCAGGUc-- -3'
miRNA:   3'- -CGGCGa---GCUuuGGCCU--GCGUUUAuuu -5'
28094 5' -49.4 NC_005887.1 + 16036 0.69 0.766459
Target:  5'- aGCCGCa-GGAGCCGGuauUGCAGAc--- -3'
miRNA:   3'- -CGGCGagCUUUGGCCu--GCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 41373 0.68 0.818497
Target:  5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3'
miRNA:   3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 11026 0.68 0.837837
Target:  5'- uCUGgUCGAguguugggagAACCGGGCGCAGgcGUGGAc -3'
miRNA:   3'- cGGCgAGCU----------UUGGCCUGCGUU--UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 3831 0.68 0.847143
Target:  5'- cCCGUUCGcAAUCGGGCGCu------ -3'
miRNA:   3'- cGGCGAGCuUUGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 22996 0.68 0.85619
Target:  5'- uGCCGCugaUCGAcGCCGGuCGCu------ -3'
miRNA:   3'- -CGGCG---AGCUuUGGCCuGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 34376 0.68 0.85619
Target:  5'- cCCGCguaucaGAGugcgGCCGGGCGCGAGg--- -3'
miRNA:   3'- cGGCGag----CUU----UGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 29501 0.67 0.864971
Target:  5'- aGCCGgcggcCUCGAcGgCGGGCGCGuuGUAGAa -3'
miRNA:   3'- -CGGC-----GAGCUuUgGCCUGCGUu-UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 15071 0.67 0.872636
Target:  5'- uGUCGC-CGAAgggagccGCCGGcguguCGCAGAUGAu -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCu----GCGUUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 24545 0.7 0.755524
Target:  5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3'
miRNA:   3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5'
28094 5' -49.4 NC_005887.1 + 28574 0.7 0.733236
Target:  5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3'
miRNA:   3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 14701 0.7 0.733236
Target:  5'- cGUCGCggCGGgcgGGCCGGGCGCGGcgAu- -3'
miRNA:   3'- -CGGCGa-GCU---UUGGCCUGCGUUuaUuu -5'
28094 5' -49.4 NC_005887.1 + 21814 0.73 0.558704
Target:  5'- uCCGCggCGcuGCCGGGCGCGccgAAUGAAa -3'
miRNA:   3'- cGGCGa-GCuuUGGCCUGCGU---UUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 4336 0.73 0.570277
Target:  5'- uGCCGCaggaacugaUCGAcGCCGG-CGCGGAUGu- -3'
miRNA:   3'- -CGGCG---------AGCUuUGGCCuGCGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 30590 0.72 0.6053
Target:  5'- cGUCGCUUcGAGCCGGAuCGCGAGc--- -3'
miRNA:   3'- -CGGCGAGcUUUGGCCU-GCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 25025 0.72 0.617041
Target:  5'- gGCCGC-CGGccAGCCGGuaGCGCAGAa--- -3'
miRNA:   3'- -CGGCGaGCU--UUGGCC--UGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 19262 0.71 0.687383
Target:  5'- aCCGCUUGguGCCGccGACGCAAGa--- -3'
miRNA:   3'- cGGCGAGCuuUGGC--CUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 4583 0.7 0.710485
Target:  5'- aGCCGC-CGAGGCgcaGGccGCGCAGAUGc- -3'
miRNA:   3'- -CGGCGaGCUUUGg--CC--UGCGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 6459 0.7 0.733236
Target:  5'- uCUGUcCGaAGACCGGGCGCAGAUcGAg -3'
miRNA:   3'- cGGCGaGC-UUUGGCCUGCGUUUAuUU- -5'
28094 5' -49.4 NC_005887.1 + 13565 0.7 0.733236
Target:  5'- uGCCGCcCGAGcagGCCGacGACGCGAAg--- -3'
miRNA:   3'- -CGGCGaGCUU---UGGC--CUGCGUUUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.