Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28094 | 5' | -49.4 | NC_005887.1 | + | 30590 | 0.72 | 0.6053 |
Target: 5'- cGUCGCUUcGAGCCGGAuCGCGAGc--- -3' miRNA: 3'- -CGGCGAGcUUUGGCCU-GCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 25025 | 0.72 | 0.617041 |
Target: 5'- gGCCGC-CGGccAGCCGGuaGCGCAGAa--- -3' miRNA: 3'- -CGGCGaGCU--UUGGCC--UGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 19262 | 0.71 | 0.687383 |
Target: 5'- aCCGCUUGguGCCGccGACGCAAGa--- -3' miRNA: 3'- cGGCGAGCuuUGGC--CUGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 4583 | 0.7 | 0.710485 |
Target: 5'- aGCCGC-CGAGGCgcaGGccGCGCAGAUGc- -3' miRNA: 3'- -CGGCGaGCUUUGg--CC--UGCGUUUAUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 6459 | 0.7 | 0.733236 |
Target: 5'- uCUGUcCGaAGACCGGGCGCAGAUcGAg -3' miRNA: 3'- cGGCGaGC-UUUGGCCUGCGUUUAuUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 41373 | 0.68 | 0.818497 |
Target: 5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3' miRNA: 3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 16036 | 0.69 | 0.766459 |
Target: 5'- aGCCGCa-GGAGCCGGuauUGCAGAc--- -3' miRNA: 3'- -CGGCGagCUUUGGCCu--GCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 24545 | 0.7 | 0.755524 |
Target: 5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3' miRNA: 3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 28574 | 0.7 | 0.733236 |
Target: 5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3' miRNA: 3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 14701 | 0.7 | 0.733236 |
Target: 5'- cGUCGCggCGGgcgGGCCGGGCGCGGcgAu- -3' miRNA: 3'- -CGGCGa-GCU---UUGGCCUGCGUUuaUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 13565 | 0.7 | 0.733236 |
Target: 5'- uGCCGCcCGAGcagGCCGacGACGCGAAg--- -3' miRNA: 3'- -CGGCGaGCUU---UGGC--CUGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 10514 | 0.67 | 0.881692 |
Target: 5'- aGCCGUauUCGGAACgGGGCgGCGGcaAGAa -3' miRNA: 3'- -CGGCG--AGCUUUGgCCUG-CGUUuaUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 12991 | 0.67 | 0.881692 |
Target: 5'- uGCCGCUCGcggcuGCCGGGuucucCGCGu----- -3' miRNA: 3'- -CGGCGAGCuu---UGGCCU-----GCGUuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 11095 | 0.67 | 0.889617 |
Target: 5'- gGCCGa-CGAGuACUGGugGCAGAa--- -3' miRNA: 3'- -CGGCgaGCUU-UGGCCugCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 23456 | 0.67 | 0.897243 |
Target: 5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3' miRNA: 3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 33883 | 0.66 | 0.91089 |
Target: 5'- cGUCGC-CGAGcgguugcGCCGGGCGCu------ -3' miRNA: 3'- -CGGCGaGCUU-------UGGCCUGCGuuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 34745 | 0.66 | 0.911577 |
Target: 5'- cGCCGCccaUCGAucAACCGGcgccgcuuACGCGAu---- -3' miRNA: 3'- -CGGCG---AGCU--UUGGCC--------UGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 19123 | 0.66 | 0.918277 |
Target: 5'- cGCCGCUCGcguGCCGucGGCGUg------ -3' miRNA: 3'- -CGGCGAGCuu-UGGC--CUGCGuuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 3338 | 0.66 | 0.924663 |
Target: 5'- aGCCGCcgUCGAcuGCgCGGugGCAc----- -3' miRNA: 3'- -CGGCG--AGCUu-UG-GCCugCGUuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 3218 | 1.08 | 0.003037 |
Target: 5'- gGCCGCUCGAAACCGGACGCAAAUAAAc -3' miRNA: 3'- -CGGCGAGCUUUGGCCUGCGUUUAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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