Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28094 | 5' | -49.4 | NC_005887.1 | + | 14001 | 0.66 | 0.924663 |
Target: 5'- -gUGCUCGAAgccaaugccgcGCCGG-CGCAGAc--- -3' miRNA: 3'- cgGCGAGCUU-----------UGGCCuGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 14113 | 0.68 | 0.847143 |
Target: 5'- cGCCGCUcgCGAAGCUGcGCGCGc----- -3' miRNA: 3'- -CGGCGA--GCUUUGGCcUGCGUuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 14310 | 0.68 | 0.818497 |
Target: 5'- cGCCuGCUCGAucacGCCG-ACGCAG-UGAAg -3' miRNA: 3'- -CGG-CGAGCUu---UGGCcUGCGUUuAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 14701 | 0.7 | 0.733236 |
Target: 5'- cGUCGCggCGGgcgGGCCGGGCGCGGcgAu- -3' miRNA: 3'- -CGGCGa-GCU---UUGGCCUGCGUUuaUuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 15071 | 0.67 | 0.872636 |
Target: 5'- uGUCGC-CGAAgggagccGCCGGcguguCGCAGAUGAu -3' miRNA: 3'- -CGGCGaGCUU-------UGGCCu----GCGUUUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 15589 | 0.67 | 0.889617 |
Target: 5'- aUCGC-CGAAGCUGaGACGCAGc---- -3' miRNA: 3'- cGGCGaGCUUUGGC-CUGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 16036 | 0.69 | 0.766459 |
Target: 5'- aGCCGCa-GGAGCCGGuauUGCAGAc--- -3' miRNA: 3'- -CGGCGagCUUUGGCCu--GCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 16087 | 0.66 | 0.911577 |
Target: 5'- cGCCGCacauGGCCGGugGUGAAa--- -3' miRNA: 3'- -CGGCGagcuUUGGCCugCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 16202 | 0.67 | 0.881692 |
Target: 5'- gGCCGCgcugCGA--CCGGAcaCGCAGGUc-- -3' miRNA: 3'- -CGGCGa---GCUuuGGCCU--GCGUUUAuuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 19123 | 0.66 | 0.918277 |
Target: 5'- cGCCGCUCGcguGCCGucGGCGUg------ -3' miRNA: 3'- -CGGCGAGCuu-UGGC--CUGCGuuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 19262 | 0.71 | 0.687383 |
Target: 5'- aCCGCUUGguGCCGccGACGCAAGa--- -3' miRNA: 3'- cGGCGAGCuuUGGC--CUGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 21814 | 0.73 | 0.558704 |
Target: 5'- uCCGCggCGcuGCCGGGCGCGccgAAUGAAa -3' miRNA: 3'- cGGCGa-GCuuUGGCCUGCGU---UUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 22996 | 0.68 | 0.85619 |
Target: 5'- uGCCGCugaUCGAcGCCGGuCGCu------ -3' miRNA: 3'- -CGGCG---AGCUuUGGCCuGCGuuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 23456 | 0.67 | 0.897243 |
Target: 5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3' miRNA: 3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 24545 | 0.7 | 0.755524 |
Target: 5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3' miRNA: 3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 25025 | 0.72 | 0.617041 |
Target: 5'- gGCCGC-CGGccAGCCGGuaGCGCAGAa--- -3' miRNA: 3'- -CGGCGaGCU--UUGGCC--UGCGUUUauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 26724 | 0.75 | 0.458552 |
Target: 5'- gGCaGCUCGAcauaGACCGGGCGCAc----- -3' miRNA: 3'- -CGgCGAGCU----UUGGCCUGCGUuuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 28574 | 0.7 | 0.733236 |
Target: 5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3' miRNA: 3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 28958 | 0.66 | 0.924663 |
Target: 5'- gGUC-CUCGAcuucgAGCCGGACG-AAGUGGAc -3' miRNA: 3'- -CGGcGAGCU-----UUGGCCUGCgUUUAUUU- -5' |
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28094 | 5' | -49.4 | NC_005887.1 | + | 29501 | 0.67 | 0.864971 |
Target: 5'- aGCCGgcggcCUCGAcGgCGGGCGCGuuGUAGAa -3' miRNA: 3'- -CGGC-----GAGCUuUgGCCUGCGUu-UAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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