miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 859 0.68 0.828285
Target:  5'- uGCCGUUCG-AGCCGGugccAUGCgGGAUGAu -3'
miRNA:   3'- -CGGCGAGCuUUGGCC----UGCG-UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 3218 1.08 0.003037
Target:  5'- gGCCGCUCGAAACCGGACGCAAAUAAAc -3'
miRNA:   3'- -CGGCGAGCUUUGGCCUGCGUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 3338 0.66 0.924663
Target:  5'- aGCCGCcgUCGAcuGCgCGGugGCAc----- -3'
miRNA:   3'- -CGGCG--AGCUu-UG-GCCugCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 3831 0.68 0.847143
Target:  5'- cCCGUUCGcAAUCGGGCGCu------ -3'
miRNA:   3'- cGGCGAGCuUUGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 4336 0.73 0.570277
Target:  5'- uGCCGCaggaacugaUCGAcGCCGG-CGCGGAUGu- -3'
miRNA:   3'- -CGGCG---------AGCUuUGGCCuGCGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 4583 0.7 0.710485
Target:  5'- aGCCGC-CGAGGCgcaGGccGCGCAGAUGc- -3'
miRNA:   3'- -CGGCGaGCUUUGg--CC--UGCGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 4897 0.66 0.924663
Target:  5'- gGUCGC-CGAgGGCCGG-CGCGAGg--- -3'
miRNA:   3'- -CGGCGaGCU-UUGGCCuGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 5932 0.74 0.502021
Target:  5'- gGCCGCgcgGAAGgCGGuGCGCAAAUGAAc -3'
miRNA:   3'- -CGGCGag-CUUUgGCC-UGCGUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 6053 0.69 0.765372
Target:  5'- cGCCGCgcagaUCGGccAACCGGACgagucgaGCGAGUAc- -3'
miRNA:   3'- -CGGCG-----AGCU--UUGGCCUG-------CGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 6459 0.7 0.733236
Target:  5'- uCUGUcCGaAGACCGGGCGCAGAUcGAg -3'
miRNA:   3'- cGGCGaGC-UUUGGCCUGCGUUUAuUU- -5'
28094 5' -49.4 NC_005887.1 + 6993 0.67 0.873474
Target:  5'- cCCGCgUGguGCCGGGCGUGAAg--- -3'
miRNA:   3'- cGGCGaGCuuUGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 7410 0.69 0.777236
Target:  5'- cGCCGaguUCGAAGCCGGcgACgGCAAGUu-- -3'
miRNA:   3'- -CGGCg--AGCUUUGGCC--UG-CGUUUAuuu -5'
28094 5' -49.4 NC_005887.1 + 9735 0.7 0.710485
Target:  5'- uGCCGCUCGAcgggaagcucguGugCGGGCuGCAcGUGc- -3'
miRNA:   3'- -CGGCGAGCU------------UugGCCUG-CGUuUAUuu -5'
28094 5' -49.4 NC_005887.1 + 10169 0.66 0.904565
Target:  5'- gGCUGgcaUCGGcauCCGGACGCGAAc--- -3'
miRNA:   3'- -CGGCg--AGCUuu-GGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 10514 0.67 0.881692
Target:  5'- aGCCGUauUCGGAACgGGGCgGCGGcaAGAa -3'
miRNA:   3'- -CGGCG--AGCUUUGgCCUG-CGUUuaUUU- -5'
28094 5' -49.4 NC_005887.1 + 11026 0.68 0.837837
Target:  5'- uCUGgUCGAguguugggagAACCGGGCGCAGgcGUGGAc -3'
miRNA:   3'- cGGCgAGCU----------UUGGCCUGCGUU--UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 11095 0.67 0.889617
Target:  5'- gGCCGa-CGAGuACUGGugGCAGAa--- -3'
miRNA:   3'- -CGGCgaGCUU-UGGCCugCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 12030 0.66 0.92278
Target:  5'- cGCCGCUCGcAACCGucgaagacaacacaGGCGCc------ -3'
miRNA:   3'- -CGGCGAGCuUUGGC--------------CUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 12991 0.67 0.881692
Target:  5'- uGCCGCUCGcggcuGCCGGGuucucCGCGu----- -3'
miRNA:   3'- -CGGCGAGCuu---UGGCCU-----GCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 13565 0.7 0.733236
Target:  5'- uGCCGCcCGAGcagGCCGacGACGCGAAg--- -3'
miRNA:   3'- -CGGCGaGCUU---UGGC--CUGCGUUUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.