miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 41373 0.68 0.818497
Target:  5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3'
miRNA:   3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 40992 0.66 0.904565
Target:  5'- uGCCcgaGCUCGAAGCCuGGuACGU--GUGGAc -3'
miRNA:   3'- -CGG---CGAGCUUUGG-CC-UGCGuuUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 40033 0.67 0.889617
Target:  5'- cGCgGCUCGAGgcgGCCGGccuACGCccGAUAc- -3'
miRNA:   3'- -CGgCGAGCUU---UGGCC---UGCGu-UUAUuu -5'
28094 5' -49.4 NC_005887.1 + 39918 0.66 0.904565
Target:  5'- uGCgCGCagaUCG-AGCCGGGCGCGu----- -3'
miRNA:   3'- -CG-GCG---AGCuUUGGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 39153 0.67 0.897243
Target:  5'- gGCCGCucucccauUCGGAGaCGGACGCGc----- -3'
miRNA:   3'- -CGGCG--------AGCUUUgGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 34745 0.66 0.911577
Target:  5'- cGCCGCccaUCGAucAACCGGcgccgcuuACGCGAu---- -3'
miRNA:   3'- -CGGCG---AGCU--UUGGCC--------UGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 34376 0.68 0.85619
Target:  5'- cCCGCguaucaGAGugcgGCCGGGCGCGAGg--- -3'
miRNA:   3'- cGGCGag----CUU----UGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 33883 0.66 0.91089
Target:  5'- cGUCGC-CGAGcgguugcGCCGGGCGCu------ -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 33656 0.69 0.776166
Target:  5'- cGCCGCggCGGAucGCCGGGCccuGCAccgucgcGAUGAAg -3'
miRNA:   3'- -CGGCGa-GCUU--UGGCCUG---CGU-------UUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 33020 0.68 0.85619
Target:  5'- uGCCGUcccaUCGAcuACCGGACGUg------ -3'
miRNA:   3'- -CGGCG----AGCUu-UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 32176 0.68 0.837837
Target:  5'- aCCGUUCGcguCCGGAUGCcGAUGc- -3'
miRNA:   3'- cGGCGAGCuuuGGCCUGCGuUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 30590 0.72 0.6053
Target:  5'- cGUCGCUUcGAGCCGGAuCGCGAGc--- -3'
miRNA:   3'- -CGGCGAGcUUUGGCCU-GCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 29501 0.67 0.864971
Target:  5'- aGCCGgcggcCUCGAcGgCGGGCGCGuuGUAGAa -3'
miRNA:   3'- -CGGC-----GAGCUuUgGCCUGCGUu-UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 28958 0.66 0.924663
Target:  5'- gGUC-CUCGAcuucgAGCCGGACG-AAGUGGAc -3'
miRNA:   3'- -CGGcGAGCU-----UUGGCCUGCgUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 28574 0.7 0.733236
Target:  5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3'
miRNA:   3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 26724 0.75 0.458552
Target:  5'- gGCaGCUCGAcauaGACCGGGCGCAc----- -3'
miRNA:   3'- -CGgCGAGCU----UUGGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 25025 0.72 0.617041
Target:  5'- gGCCGC-CGGccAGCCGGuaGCGCAGAa--- -3'
miRNA:   3'- -CGGCGaGCU--UUGGCC--UGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 24545 0.7 0.755524
Target:  5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3'
miRNA:   3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5'
28094 5' -49.4 NC_005887.1 + 23456 0.67 0.897243
Target:  5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3'
miRNA:   3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 22996 0.68 0.85619
Target:  5'- uGCCGCugaUCGAcGCCGGuCGCu------ -3'
miRNA:   3'- -CGGCG---AGCUuUGGCCuGCGuuuauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.