miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 41373 0.68 0.818497
Target:  5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3'
miRNA:   3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 859 0.68 0.828285
Target:  5'- uGCCGUUCG-AGCCGGugccAUGCgGGAUGAu -3'
miRNA:   3'- -CGGCGAGCuUUGGCC----UGCG-UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 32176 0.68 0.837837
Target:  5'- aCCGUUCGcguCCGGAUGCcGAUGc- -3'
miRNA:   3'- cGGCGAGCuuuGGCCUGCGuUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 11026 0.68 0.837837
Target:  5'- uCUGgUCGAguguugggagAACCGGGCGCAGgcGUGGAc -3'
miRNA:   3'- cGGCgAGCU----------UUGGCCUGCGUU--UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 14113 0.68 0.847143
Target:  5'- cGCCGCUcgCGAAGCUGcGCGCGc----- -3'
miRNA:   3'- -CGGCGA--GCUUUGGCcUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 3831 0.68 0.847143
Target:  5'- cCCGUUCGcAAUCGGGCGCu------ -3'
miRNA:   3'- cGGCGAGCuUUGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 22996 0.68 0.85619
Target:  5'- uGCCGCugaUCGAcGCCGGuCGCu------ -3'
miRNA:   3'- -CGGCG---AGCUuUGGCCuGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 33020 0.68 0.85619
Target:  5'- uGCCGUcccaUCGAcuACCGGACGUg------ -3'
miRNA:   3'- -CGGCG----AGCUu-UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 34376 0.68 0.85619
Target:  5'- cCCGCguaucaGAGugcgGCCGGGCGCGAGg--- -3'
miRNA:   3'- cGGCGag----CUU----UGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 29501 0.67 0.864971
Target:  5'- aGCCGgcggcCUCGAcGgCGGGCGCGuuGUAGAa -3'
miRNA:   3'- -CGGC-----GAGCUuUgGCCUGCGUu-UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 15071 0.67 0.872636
Target:  5'- uGUCGC-CGAAgggagccGCCGGcguguCGCAGAUGAu -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCu----GCGUUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 6993 0.67 0.873474
Target:  5'- cCCGCgUGguGCCGGGCGUGAAg--- -3'
miRNA:   3'- cGGCGaGCuuUGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 16202 0.67 0.881692
Target:  5'- gGCCGCgcugCGA--CCGGAcaCGCAGGUc-- -3'
miRNA:   3'- -CGGCGa---GCUuuGGCCU--GCGUUUAuuu -5'
28094 5' -49.4 NC_005887.1 + 12991 0.67 0.881692
Target:  5'- uGCCGCUCGcggcuGCCGGGuucucCGCGu----- -3'
miRNA:   3'- -CGGCGAGCuu---UGGCCU-----GCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 10514 0.67 0.881692
Target:  5'- aGCCGUauUCGGAACgGGGCgGCGGcaAGAa -3'
miRNA:   3'- -CGGCG--AGCUUUGgCCUG-CGUUuaUUU- -5'
28094 5' -49.4 NC_005887.1 + 15589 0.67 0.889617
Target:  5'- aUCGC-CGAAGCUGaGACGCAGc---- -3'
miRNA:   3'- cGGCGaGCUUUGGC-CUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 11095 0.67 0.889617
Target:  5'- gGCCGa-CGAGuACUGGugGCAGAa--- -3'
miRNA:   3'- -CGGCgaGCUU-UGGCCugCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 40033 0.67 0.889617
Target:  5'- cGCgGCUCGAGgcgGCCGGccuACGCccGAUAc- -3'
miRNA:   3'- -CGgCGAGCUU---UGGCC---UGCGu-UUAUuu -5'
28094 5' -49.4 NC_005887.1 + 39153 0.67 0.897243
Target:  5'- gGCCGCucucccauUCGGAGaCGGACGCGc----- -3'
miRNA:   3'- -CGGCG--------AGCUUUgGCCUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 23456 0.67 0.897243
Target:  5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3'
miRNA:   3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.