miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 6993 0.67 0.873474
Target:  5'- cCCGCgUGguGCCGGGCGUGAAg--- -3'
miRNA:   3'- cGGCGaGCuuUGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 15071 0.67 0.872636
Target:  5'- uGUCGC-CGAAgggagccGCCGGcguguCGCAGAUGAu -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCu----GCGUUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 29501 0.67 0.864971
Target:  5'- aGCCGgcggcCUCGAcGgCGGGCGCGuuGUAGAa -3'
miRNA:   3'- -CGGC-----GAGCUuUgGCCUGCGUu-UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 34376 0.68 0.85619
Target:  5'- cCCGCguaucaGAGugcgGCCGGGCGCGAGg--- -3'
miRNA:   3'- cGGCGag----CUU----UGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 33020 0.68 0.85619
Target:  5'- uGCCGUcccaUCGAcuACCGGACGUg------ -3'
miRNA:   3'- -CGGCG----AGCUu-UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 22996 0.68 0.85619
Target:  5'- uGCCGCugaUCGAcGCCGGuCGCu------ -3'
miRNA:   3'- -CGGCG---AGCUuUGGCCuGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 3831 0.68 0.847143
Target:  5'- cCCGUUCGcAAUCGGGCGCu------ -3'
miRNA:   3'- cGGCGAGCuUUGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 14113 0.68 0.847143
Target:  5'- cGCCGCUcgCGAAGCUGcGCGCGc----- -3'
miRNA:   3'- -CGGCGA--GCUUUGGCcUGCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 32176 0.68 0.837837
Target:  5'- aCCGUUCGcguCCGGAUGCcGAUGc- -3'
miRNA:   3'- cGGCGAGCuuuGGCCUGCGuUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 11026 0.68 0.837837
Target:  5'- uCUGgUCGAguguugggagAACCGGGCGCAGgcGUGGAc -3'
miRNA:   3'- cGGCgAGCU----------UUGGCCUGCGUU--UAUUU- -5'
28094 5' -49.4 NC_005887.1 + 859 0.68 0.828285
Target:  5'- uGCCGUUCG-AGCCGGugccAUGCgGGAUGAu -3'
miRNA:   3'- -CGGCGAGCuUUGGCC----UGCG-UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 41373 0.68 0.818497
Target:  5'- aGCUGUUCGAgcaGACCGuGCGCGAc---- -3'
miRNA:   3'- -CGGCGAGCU---UUGGCcUGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 14310 0.68 0.818497
Target:  5'- cGCCuGCUCGAucacGCCG-ACGCAG-UGAAg -3'
miRNA:   3'- -CGG-CGAGCUu---UGGCcUGCGUUuAUUU- -5'
28094 5' -49.4 NC_005887.1 + 7410 0.69 0.777236
Target:  5'- cGCCGaguUCGAAGCCGGcgACgGCAAGUu-- -3'
miRNA:   3'- -CGGCg--AGCUUUGGCC--UG-CGUUUAuuu -5'
28094 5' -49.4 NC_005887.1 + 33656 0.69 0.776166
Target:  5'- cGCCGCggCGGAucGCCGGGCccuGCAccgucgcGAUGAAg -3'
miRNA:   3'- -CGGCGa-GCUU--UGGCCUG---CGU-------UUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 16036 0.69 0.766459
Target:  5'- aGCCGCa-GGAGCCGGuauUGCAGAc--- -3'
miRNA:   3'- -CGGCGagCUUUGGCCu--GCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 6053 0.69 0.765372
Target:  5'- cGCCGCgcagaUCGGccAACCGGACgagucgaGCGAGUAc- -3'
miRNA:   3'- -CGGCG-----AGCU--UUGGCCUG-------CGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 24545 0.7 0.755524
Target:  5'- gGCCGCaccuUCG--GCCGGGCGCccAUGAu -3'
miRNA:   3'- -CGGCG----AGCuuUGGCCUGCGuuUAUUu -5'
28094 5' -49.4 NC_005887.1 + 14701 0.7 0.733236
Target:  5'- cGUCGCggCGGgcgGGCCGGGCGCGGcgAu- -3'
miRNA:   3'- -CGGCGa-GCU---UUGGCCUGCGUUuaUuu -5'
28094 5' -49.4 NC_005887.1 + 28574 0.7 0.733236
Target:  5'- cGCCGCcCGcuGCgCGGACGCGGu---- -3'
miRNA:   3'- -CGGCGaGCuuUG-GCCUGCGUUuauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.