miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28094 5' -49.4 NC_005887.1 + 14001 0.66 0.924663
Target:  5'- -gUGCUCGAAgccaaugccgcGCCGG-CGCAGAc--- -3'
miRNA:   3'- cgGCGAGCUU-----------UGGCCuGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 6053 0.69 0.765372
Target:  5'- cGCCGCgcagaUCGGccAACCGGACgagucgaGCGAGUAc- -3'
miRNA:   3'- -CGGCG-----AGCU--UUGGCCUG-------CGUUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 5932 0.74 0.502021
Target:  5'- gGCCGCgcgGAAGgCGGuGCGCAAAUGAAc -3'
miRNA:   3'- -CGGCGag-CUUUgGCC-UGCGUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 3218 1.08 0.003037
Target:  5'- gGCCGCUCGAAACCGGACGCAAAUAAAc -3'
miRNA:   3'- -CGGCGAGCUUUGGCCUGCGUUUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 33883 0.66 0.91089
Target:  5'- cGUCGC-CGAGcgguugcGCCGGGCGCu------ -3'
miRNA:   3'- -CGGCGaGCUU-------UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 23456 0.67 0.897243
Target:  5'- gGCUGC-CGguGCCGGGCGaccagAAAUAAu -3'
miRNA:   3'- -CGGCGaGCuuUGGCCUGCg----UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 12991 0.67 0.881692
Target:  5'- uGCCGCUCGcggcuGCCGGGuucucCGCGu----- -3'
miRNA:   3'- -CGGCGAGCuu---UGGCCU-----GCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 10514 0.67 0.881692
Target:  5'- aGCCGUauUCGGAACgGGGCgGCGGcaAGAa -3'
miRNA:   3'- -CGGCG--AGCUUUGgCCUG-CGUUuaUUU- -5'
28094 5' -49.4 NC_005887.1 + 32176 0.68 0.837837
Target:  5'- aCCGUUCGcguCCGGAUGCcGAUGc- -3'
miRNA:   3'- cGGCGAGCuuuGGCCUGCGuUUAUuu -5'
28094 5' -49.4 NC_005887.1 + 33656 0.69 0.776166
Target:  5'- cGCCGCggCGGAucGCCGGGCccuGCAccgucgcGAUGAAg -3'
miRNA:   3'- -CGGCGa-GCUU--UGGCCUG---CGU-------UUAUUU- -5'
28094 5' -49.4 NC_005887.1 + 859 0.68 0.828285
Target:  5'- uGCCGUUCG-AGCCGGugccAUGCgGGAUGAu -3'
miRNA:   3'- -CGGCGAGCuUUGGCC----UGCG-UUUAUUu -5'
28094 5' -49.4 NC_005887.1 + 33020 0.68 0.85619
Target:  5'- uGCCGUcccaUCGAcuACCGGACGUg------ -3'
miRNA:   3'- -CGGCG----AGCUu-UGGCCUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 3338 0.66 0.924663
Target:  5'- aGCCGCcgUCGAcuGCgCGGugGCAc----- -3'
miRNA:   3'- -CGGCG--AGCUu-UG-GCCugCGUuuauuu -5'
28094 5' -49.4 NC_005887.1 + 14310 0.68 0.818497
Target:  5'- cGCCuGCUCGAucacGCCG-ACGCAG-UGAAg -3'
miRNA:   3'- -CGG-CGAGCUu---UGGCcUGCGUUuAUUU- -5'
28094 5' -49.4 NC_005887.1 + 19123 0.66 0.918277
Target:  5'- cGCCGCUCGcguGCCGucGGCGUg------ -3'
miRNA:   3'- -CGGCGAGCuu-UGGC--CUGCGuuuauuu -5'
28094 5' -49.4 NC_005887.1 + 6993 0.67 0.873474
Target:  5'- cCCGCgUGguGCCGGGCGUGAAg--- -3'
miRNA:   3'- cGGCGaGCuuUGGCCUGCGUUUauuu -5'
28094 5' -49.4 NC_005887.1 + 7410 0.69 0.777236
Target:  5'- cGCCGaguUCGAAGCCGGcgACgGCAAGUu-- -3'
miRNA:   3'- -CGGCg--AGCUUUGGCC--UG-CGUUUAuuu -5'
28094 5' -49.4 NC_005887.1 + 9735 0.7 0.710485
Target:  5'- uGCCGCUCGAcgggaagcucguGugCGGGCuGCAcGUGc- -3'
miRNA:   3'- -CGGCGAGCU------------UugGCCUG-CGUuUAUuu -5'
28094 5' -49.4 NC_005887.1 + 34745 0.66 0.911577
Target:  5'- cGCCGCccaUCGAucAACCGGcgccgcuuACGCGAu---- -3'
miRNA:   3'- -CGGCG---AGCU--UUGGCC--------UGCGUUuauuu -5'
28094 5' -49.4 NC_005887.1 + 11095 0.67 0.889617
Target:  5'- gGCCGa-CGAGuACUGGugGCAGAa--- -3'
miRNA:   3'- -CGGCgaGCUU-UGGCCugCGUUUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.