Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28097 | 5' | -59 | NC_005887.1 | + | 39068 | 0.65 | 0.417431 |
Target: 5'- cGCCGGCgugaucauggaaucCAucGCGGCgacgaaguugcgcAGCGCGAGCGg- -3' miRNA: 3'- aCGGCCG--------------GU--CGCCG-------------UCGUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 22952 | 0.66 | 0.402324 |
Target: 5'- cG-CGGaCCGauacgcucuGCGGCAGCugcGCGAGCAUGg -3' miRNA: 3'- aCgGCC-GGU---------CGCCGUCG---UGCUUGUAU- -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 3338 | 0.66 | 0.411726 |
Target: 5'- aGCC-GCCGucgacugcGCGGUGGCACGaAACAa- -3' miRNA: 3'- aCGGcCGGU--------CGCCGUCGUGC-UUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 21587 | 0.66 | 0.402324 |
Target: 5'- cUGCCGGCaucGuCGGCAcgacCACGAACGa- -3' miRNA: 3'- -ACGGCCGgu-C-GCCGUc---GUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 31689 | 0.66 | 0.402324 |
Target: 5'- gGCCGGCUGGUucgucGGCAGaaccuCGGACGc- -3' miRNA: 3'- aCGGCCGGUCG-----CCGUCgu---GCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 17270 | 0.66 | 0.402324 |
Target: 5'- gUGCCGGgCgagacgucgGGCGGCGccGCGCGcGCAa- -3' miRNA: 3'- -ACGGCCgG---------UCGCCGU--CGUGCuUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 23938 | 0.66 | 0.383936 |
Target: 5'- cGUCGGCCucGCGGCGucugcGCACGcaccGACGa- -3' miRNA: 3'- aCGGCCGGu-CGCCGU-----CGUGC----UUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 34009 | 0.66 | 0.411726 |
Target: 5'- gGCC-GCCAGaCGGCA-CGCGAAUg-- -3' miRNA: 3'- aCGGcCGGUC-GCCGUcGUGCUUGuau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 15243 | 0.66 | 0.363491 |
Target: 5'- cGgCGGCCcgaAGCaGGCAGCcgcagugcugcgcgGCGAGCGUc -3' miRNA: 3'- aCgGCCGG---UCG-CCGUCG--------------UGCUUGUAu -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 26668 | 0.66 | 0.411726 |
Target: 5'- -uCCGGCCGcGCGGCGGUgagcugguCGAGCu-- -3' miRNA: 3'- acGGCCGGU-CGCCGUCGu-------GCUUGuau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 18546 | 0.66 | 0.383936 |
Target: 5'- -cUCGGUgGGCGGCGGCgccggcuucGCGGGCGa- -3' miRNA: 3'- acGGCCGgUCGCCGUCG---------UGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 5524 | 0.66 | 0.374954 |
Target: 5'- -aCCGGCCgcAGCaGGCAcGCACGAuucugcgcccACGUGg -3' miRNA: 3'- acGGCCGG--UCG-CCGU-CGUGCU----------UGUAU- -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 36996 | 0.66 | 0.366115 |
Target: 5'- cGCCGGCgAGCacgcGCAGgccguaCGCGAACAc- -3' miRNA: 3'- aCGGCCGgUCGc---CGUC------GUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 13163 | 0.66 | 0.411726 |
Target: 5'- uUGCCGcGCgcgcgcagaCAGCGGgAGCGguCGAGCAg- -3' miRNA: 3'- -ACGGC-CG---------GUCGCCgUCGU--GCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 1411 | 0.66 | 0.383936 |
Target: 5'- cGCuCGG-CAGCGGCAagACGAACGc- -3' miRNA: 3'- aCG-GCCgGUCGCCGUcgUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 17150 | 0.66 | 0.383032 |
Target: 5'- gUGCUGGUCGGCgaagaucgcgaGGCGugggagcGCGCGAACGc- -3' miRNA: 3'- -ACGGCCGGUCG-----------CCGU-------CGUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 951 | 0.66 | 0.393061 |
Target: 5'- gUGCuuCGGCgaaGGCGuGCAGCACGAGg--- -3' miRNA: 3'- -ACG--GCCGg--UCGC-CGUCGUGCUUguau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 40781 | 0.66 | 0.374954 |
Target: 5'- cGCCGaGCCGGCGGUcgagguucguGGCgGCGAcGCGc- -3' miRNA: 3'- aCGGC-CGGUCGCCG----------UCG-UGCU-UGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 15513 | 0.66 | 0.369633 |
Target: 5'- cGCCGGCCAGUuuccggacgucgcgaGGUucGuCACGGGCGa- -3' miRNA: 3'- aCGGCCGGUCG---------------CCGu-C-GUGCUUGUau -5' |
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28097 | 5' | -59 | NC_005887.1 | + | 2573 | 0.66 | 0.374954 |
Target: 5'- cGCaUGGCCgugAGCGGCgAGCgguacGCGGACAa- -3' miRNA: 3'- aCG-GCCGG---UCGCCG-UCG-----UGCUUGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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