miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28097 5' -59 NC_005887.1 + 951 0.66 0.393061
Target:  5'- gUGCuuCGGCgaaGGCGuGCAGCACGAGg--- -3'
miRNA:   3'- -ACG--GCCGg--UCGC-CGUCGUGCUUguau -5'
28097 5' -59 NC_005887.1 + 1411 0.66 0.383936
Target:  5'- cGCuCGG-CAGCGGCAagACGAACGc- -3'
miRNA:   3'- aCG-GCCgGUCGCCGUcgUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 1582 0.75 0.095176
Target:  5'- cGCCGGCuCGGCGGC-GCGCGGcGCGc- -3'
miRNA:   3'- aCGGCCG-GUCGCCGuCGUGCU-UGUau -5'
28097 5' -59 NC_005887.1 + 1999 0.68 0.300678
Target:  5'- gGCCGGCUAcuacgagcGCGGCAuGCA-GGGCAa- -3'
miRNA:   3'- aCGGCCGGU--------CGCCGU-CGUgCUUGUau -5'
28097 5' -59 NC_005887.1 + 2086 1.06 0.000365
Target:  5'- uUGCCGGCCAGCGGCAGCACGAACAUAu -3'
miRNA:   3'- -ACGGCCGGUCGCCGUCGUGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 2187 0.68 0.30834
Target:  5'- cGCCGGCCgcGGUgaucgGGCAGCGCaAACcgAu -3'
miRNA:   3'- aCGGCCGG--UCG-----CCGUCGUGcUUGuaU- -5'
28097 5' -59 NC_005887.1 + 2573 0.66 0.374954
Target:  5'- cGCaUGGCCgugAGCGGCgAGCgguacGCGGACAa- -3'
miRNA:   3'- aCG-GCCGG---UCGCCG-UCG-----UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 2871 0.74 0.103758
Target:  5'- aGCCuGGCCAGCGGCAaCACGcGCu-- -3'
miRNA:   3'- aCGG-CCGGUCGCCGUcGUGCuUGuau -5'
28097 5' -59 NC_005887.1 + 3338 0.66 0.411726
Target:  5'- aGCC-GCCGucgacugcGCGGUGGCACGaAACAa- -3'
miRNA:   3'- aCGGcCGGU--------CGCCGUCGUGC-UUGUau -5'
28097 5' -59 NC_005887.1 + 3803 0.66 0.374954
Target:  5'- -aCCGGCCAGUGGCGcccGCugGugUAa- -3'
miRNA:   3'- acGGCCGGUCGCCGU---CGugCuuGUau -5'
28097 5' -59 NC_005887.1 + 3855 0.68 0.27644
Target:  5'- cGUCGGCaccgacgauguguaCGGCGGCAGCcCG-GCAUAc -3'
miRNA:   3'- aCGGCCG--------------GUCGCCGUCGuGCuUGUAU- -5'
28097 5' -59 NC_005887.1 + 4316 0.7 0.225984
Target:  5'- gGCCGGCCAGCu---GC-CGGACAUGc -3'
miRNA:   3'- aCGGCCGGUCGccguCGuGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 4622 0.69 0.251148
Target:  5'- cGCCGcggcGCCGGUGGCcgccGGCGCGAuCAa- -3'
miRNA:   3'- aCGGC----CGGUCGCCG----UCGUGCUuGUau -5'
28097 5' -59 NC_005887.1 + 5410 0.67 0.340469
Target:  5'- -aCCGGCgGGCGGCgccgcagcgaccGGCGCGAcCAc- -3'
miRNA:   3'- acGGCCGgUCGCCG------------UCGUGCUuGUau -5'
28097 5' -59 NC_005887.1 + 5524 0.66 0.374954
Target:  5'- -aCCGGCCgcAGCaGGCAcGCACGAuucugcgcccACGUGg -3'
miRNA:   3'- acGGCCGG--UCG-CCGU-CGUGCU----------UGUAU- -5'
28097 5' -59 NC_005887.1 + 5928 0.66 0.402324
Target:  5'- aGCCGGCCGcGCggaaGGCGGUGCGcaaAUGa -3'
miRNA:   3'- aCGGCCGGU-CG----CCGUCGUGCuugUAU- -5'
28097 5' -59 NC_005887.1 + 5965 0.68 0.300678
Target:  5'- cGCUGGCgcgucCGGCGauGCAGCACGAuCAa- -3'
miRNA:   3'- aCGGCCG-----GUCGC--CGUCGUGCUuGUau -5'
28097 5' -59 NC_005887.1 + 7021 0.73 0.123147
Target:  5'- gGCCGGCCGccGCGGC-GCGCG-GCAg- -3'
miRNA:   3'- aCGGCCGGU--CGCCGuCGUGCuUGUau -5'
28097 5' -59 NC_005887.1 + 9078 0.73 0.130326
Target:  5'- cGCCGGCU-GCGGCGGgACGAAg--- -3'
miRNA:   3'- aCGGCCGGuCGCCGUCgUGCUUguau -5'
28097 5' -59 NC_005887.1 + 9602 0.67 0.332214
Target:  5'- gGCgCGcGCCGGCGcGCA-CGCGAGCGc- -3'
miRNA:   3'- aCG-GC-CGGUCGC-CGUcGUGCUUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.