miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28097 5' -59 NC_005887.1 + 2086 1.06 0.000365
Target:  5'- uUGCCGGCCAGCGGCAGCACGAACAUAu -3'
miRNA:   3'- -ACGGCCGGUCGCCGUCGUGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 18956 0.86 0.013413
Target:  5'- cUGCUGcggcuGCCAGCGGCAGCGCGAGCAg- -3'
miRNA:   3'- -ACGGC-----CGGUCGCCGUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 17335 0.83 0.021703
Target:  5'- gGCUGGCCGGCGGCcgccGGCGCGAGCu-- -3'
miRNA:   3'- aCGGCCGGUCGCCG----UCGUGCUUGuau -5'
28097 5' -59 NC_005887.1 + 16240 0.83 0.022364
Target:  5'- cGCCGGCCGGCGaGC-GCACGGGCAc- -3'
miRNA:   3'- aCGGCCGGUCGC-CGuCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 25028 0.82 0.03017
Target:  5'- cGCCGGCCAGcCGGUAGCGCaGAACc-- -3'
miRNA:   3'- aCGGCCGGUC-GCCGUCGUG-CUUGuau -5'
28097 5' -59 NC_005887.1 + 38944 0.77 0.061479
Target:  5'- aGCCGcccuGCCAGCGGUAGCgcgcgGCGAACAg- -3'
miRNA:   3'- aCGGC----CGGUCGCCGUCG-----UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 41588 0.76 0.073293
Target:  5'- cUGUCGGCCAGCGGCGGCccagguGCG-GCGg- -3'
miRNA:   3'- -ACGGCCGGUCGCCGUCG------UGCuUGUau -5'
28097 5' -59 NC_005887.1 + 14377 0.76 0.07999
Target:  5'- gGcCCGaGCCGGCGGCGGCAaGAGCGa- -3'
miRNA:   3'- aC-GGC-CGGUCGCCGUCGUgCUUGUau -5'
28097 5' -59 NC_005887.1 + 26338 0.75 0.087269
Target:  5'- gGCCGGCgCuGGcCGGguGCGCGAACAUc -3'
miRNA:   3'- aCGGCCG-G-UC-GCCguCGUGCUUGUAu -5'
28097 5' -59 NC_005887.1 + 9898 0.75 0.089833
Target:  5'- aGCCGGUgCAGguCGGCGGCACGAuCAUGu -3'
miRNA:   3'- aCGGCCG-GUC--GCCGUCGUGCUuGUAU- -5'
28097 5' -59 NC_005887.1 + 12352 0.75 0.092468
Target:  5'- cGCCGGCCAgGCGGUgacguGGCAggcCGAGCAg- -3'
miRNA:   3'- aCGGCCGGU-CGCCG-----UCGU---GCUUGUau -5'
28097 5' -59 NC_005887.1 + 18791 0.75 0.095176
Target:  5'- cUGCCGGCCGGCgaugcgGGCGGCGucAGCGUAc -3'
miRNA:   3'- -ACGGCCGGUCG------CCGUCGUgcUUGUAU- -5'
28097 5' -59 NC_005887.1 + 1582 0.75 0.095176
Target:  5'- cGCCGGCuCGGCGGC-GCGCGGcGCGc- -3'
miRNA:   3'- aCGGCCG-GUCGCCGuCGUGCU-UGUau -5'
28097 5' -59 NC_005887.1 + 23560 0.75 0.10082
Target:  5'- cGCCGcccgcaucGCCGGcCGGCAGUGCGAACGc- -3'
miRNA:   3'- aCGGC--------CGGUC-GCCGUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 2871 0.74 0.103758
Target:  5'- aGCCuGGCCAGCGGCAaCACGcGCu-- -3'
miRNA:   3'- aCGG-CCGGUCGCCGUcGUGCuUGuau -5'
28097 5' -59 NC_005887.1 + 28347 0.74 0.109879
Target:  5'- cGCCGGCgCGGCauuGGCuucgAGCACGAACGc- -3'
miRNA:   3'- aCGGCCG-GUCG---CCG----UCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 28967 0.74 0.119697
Target:  5'- cGCCGcGCCGGCcuuCAGCGCGAGCGc- -3'
miRNA:   3'- aCGGC-CGGUCGcc-GUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 7021 0.73 0.123147
Target:  5'- gGCCGGCCGccGCGGC-GCGCG-GCAg- -3'
miRNA:   3'- aCGGCCGGU--CGCCGuCGUGCuUGUau -5'
28097 5' -59 NC_005887.1 + 9078 0.73 0.130326
Target:  5'- cGCCGGCU-GCGGCGGgACGAAg--- -3'
miRNA:   3'- aCGGCCGGuCGCCGUCgUGCUUguau -5'
28097 5' -59 NC_005887.1 + 14531 0.72 0.145854
Target:  5'- gGCgCGGCCGuCGGCGGCGCGucgaucGGCAUGu -3'
miRNA:   3'- aCG-GCCGGUcGCCGUCGUGC------UUGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.