miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28097 5' -59 NC_005887.1 + 30701 0.68 0.278577
Target:  5'- -cUCGGCgAGCaGguGCGCGAGCAg- -3'
miRNA:   3'- acGGCCGgUCGcCguCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 31896 0.7 0.228401
Target:  5'- cGUCGGCCAGcCGGUcaGGCAugcugcugcaagaucCGGGCGUGg -3'
miRNA:   3'- aCGGCCGGUC-GCCG--UCGU---------------GCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 32778 0.7 0.231453
Target:  5'- aGCCGGCUcgugcgcaggaucGGCGcGCgccgcuucacgGGCACGAACAg- -3'
miRNA:   3'- aCGGCCGG-------------UCGC-CG-----------UCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 10026 0.69 0.238289
Target:  5'- cGCgCGGCC-GCGcUGGCACGAACAg- -3'
miRNA:   3'- aCG-GCCGGuCGCcGUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 34350 0.69 0.244648
Target:  5'- cGCCGGCCA-CGGCuGGagACGAGCGc- -3'
miRNA:   3'- aCGGCCGGUcGCCG-UCg-UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 4622 0.69 0.251148
Target:  5'- cGCCGcggcGCCGGUGGCcgccGGCGCGAuCAa- -3'
miRNA:   3'- aCGGC----CGGUCGCCG----UCGUGCUuGUau -5'
28097 5' -59 NC_005887.1 + 26218 0.69 0.25779
Target:  5'- gGCCGGCCugcAGCuGGC-GCACGggUc-- -3'
miRNA:   3'- aCGGCCGG---UCG-CCGuCGUGCuuGuau -5'
28097 5' -59 NC_005887.1 + 3855 0.68 0.27644
Target:  5'- cGUCGGCaccgacgauguguaCGGCGGCAGCcCG-GCAUAc -3'
miRNA:   3'- aCGGCCG--------------GUCGCCGUCGuGCuUGUAU- -5'
28097 5' -59 NC_005887.1 + 32245 0.68 0.278577
Target:  5'- uUGCCuGCC-GCGGagaaagguuGGCACGGGCAUGa -3'
miRNA:   3'- -ACGGcCGGuCGCCg--------UCGUGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 4316 0.7 0.225984
Target:  5'- gGCCGGCCAGCu---GC-CGGACAUGc -3'
miRNA:   3'- aCGGCCGGUCGccguCGuGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 25512 0.7 0.213649
Target:  5'- gGCgCGGCgGGUGGCGGCAuaaucgucgccgcCGAGCGg- -3'
miRNA:   3'- aCG-GCCGgUCGCCGUCGU-------------GCUUGUau -5'
28097 5' -59 NC_005887.1 + 23009 0.7 0.202443
Target:  5'- cGCCGGUCgcuucugcgaGGCGGUGGCGaagguauCGAACGUAu -3'
miRNA:   3'- aCGGCCGG----------UCGCCGUCGU-------GCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 25028 0.82 0.03017
Target:  5'- cGCCGGCCAGcCGGUAGCGCaGAACc-- -3'
miRNA:   3'- aCGGCCGGUC-GCCGUCGUG-CUUGuau -5'
28097 5' -59 NC_005887.1 + 41588 0.76 0.073293
Target:  5'- cUGUCGGCCAGCGGCGGCccagguGCG-GCGg- -3'
miRNA:   3'- -ACGGCCGGUCGCCGUCG------UGCuUGUau -5'
28097 5' -59 NC_005887.1 + 26338 0.75 0.087269
Target:  5'- gGCCGGCgCuGGcCGGguGCGCGAACAUc -3'
miRNA:   3'- aCGGCCG-G-UC-GCCguCGUGCUUGUAu -5'
28097 5' -59 NC_005887.1 + 9898 0.75 0.089833
Target:  5'- aGCCGGUgCAGguCGGCGGCACGAuCAUGu -3'
miRNA:   3'- aCGGCCG-GUC--GCCGUCGUGCUuGUAU- -5'
28097 5' -59 NC_005887.1 + 12352 0.75 0.092468
Target:  5'- cGCCGGCCAgGCGGUgacguGGCAggcCGAGCAg- -3'
miRNA:   3'- aCGGCCGGU-CGCCG-----UCGU---GCUUGUau -5'
28097 5' -59 NC_005887.1 + 23560 0.75 0.10082
Target:  5'- cGCCGcccgcaucGCCGGcCGGCAGUGCGAACGc- -3'
miRNA:   3'- aCGGC--------CGGUC-GCCGUCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 28347 0.74 0.109879
Target:  5'- cGCCGGCgCGGCauuGGCuucgAGCACGAACGc- -3'
miRNA:   3'- aCGGCCG-GUCG---CCG----UCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 14531 0.72 0.145854
Target:  5'- gGCgCGGCCGuCGGCGGCGCGucgaucGGCAUGu -3'
miRNA:   3'- aCG-GCCGGUcGCCGUCGUGC------UUGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.