miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28098 5' -58.8 NC_005887.1 + 41697 0.65 0.488443
Target:  5'- gUCGGcggucauGCGCGUGCG-CucGCCgCGCGCu -3'
miRNA:   3'- gAGCC-------CGUGCAUGUaGucCGG-GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 1709 0.66 0.469301
Target:  5'- aUCGGcGCGCGcuCGUCAGuGCCUGUcuuGCc -3'
miRNA:   3'- gAGCC-CGUGCauGUAGUC-CGGGCG---CG- -5'
28098 5' -58.8 NC_005887.1 + 36921 0.66 0.469301
Target:  5'- -gCGGGCGCGUG-GUCGcGCCgGuCGCu -3'
miRNA:   3'- gaGCCCGUGCAUgUAGUcCGGgC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 11405 0.66 0.469301
Target:  5'- -gCGGGCGCcgACAUCAccGCCgaGCGCg -3'
miRNA:   3'- gaGCCCGUGcaUGUAGUc-CGGg-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 37079 0.66 0.459381
Target:  5'- gCUCGGGCGacUGCGuuUCAGGUgCGaGCg -3'
miRNA:   3'- -GAGCCCGUgcAUGU--AGUCCGgGCgCG- -5'
28098 5' -58.8 NC_005887.1 + 3442 0.66 0.459381
Target:  5'- -aUGGGCGCGaccuaccagaGCAucggucuguUCGGGCCUgGCGCg -3'
miRNA:   3'- gaGCCCGUGCa---------UGU---------AGUCCGGG-CGCG- -5'
28098 5' -58.8 NC_005887.1 + 32292 0.66 0.459381
Target:  5'- --gGGGCGau--CGUCGGGCCagccgGCGCg -3'
miRNA:   3'- gagCCCGUgcauGUAGUCCGGg----CGCG- -5'
28098 5' -58.8 NC_005887.1 + 22587 0.66 0.459381
Target:  5'- gUCGGGCucgcaaucgUGUGCGUguGGaucgCUGCGCg -3'
miRNA:   3'- gAGCCCGu--------GCAUGUAguCCg---GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 8189 0.66 0.459381
Target:  5'- gUCGGGCAguuCG-AUGUCua-CCCGCGCa -3'
miRNA:   3'- gAGCCCGU---GCaUGUAGuccGGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 24452 0.66 0.459381
Target:  5'- --aGGaCACGcaGCAUCAGGCCguugGCGCg -3'
miRNA:   3'- gagCCcGUGCa-UGUAGUCCGGg---CGCG- -5'
28098 5' -58.8 NC_005887.1 + 18806 0.66 0.458395
Target:  5'- -gCGGGCggcgucaGCGUACGcugcCAGcucaCCCGCGCg -3'
miRNA:   3'- gaGCCCG-------UGCAUGUa---GUCc---GGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 30680 0.66 0.449574
Target:  5'- gUCGGGCAgaucgaccuCGUACucggcgagCAGGUgCGCGa -3'
miRNA:   3'- gAGCCCGU---------GCAUGua------GUCCGgGCGCg -5'
28098 5' -58.8 NC_005887.1 + 38075 0.66 0.449574
Target:  5'- uUCGuGuuGCGUugGUCAGuGCUCGuCGCg -3'
miRNA:   3'- gAGC-CcgUGCAugUAGUC-CGGGC-GCG- -5'
28098 5' -58.8 NC_005887.1 + 17530 0.66 0.449574
Target:  5'- gCUCGagggcGGCAUG-ACGUC-GGUCgGCGCg -3'
miRNA:   3'- -GAGC-----CCGUGCaUGUAGuCCGGgCGCG- -5'
28098 5' -58.8 NC_005887.1 + 4396 0.66 0.449574
Target:  5'- uUCuGGCGCGUaACGgaugCGGGCUgauucaacaaCGCGCg -3'
miRNA:   3'- gAGcCCGUGCA-UGUa---GUCCGG----------GCGCG- -5'
28098 5' -58.8 NC_005887.1 + 29387 0.66 0.449574
Target:  5'- cCUCGGcccaugccgGCGCGgucGCgAUCAGGCUCGacaGCu -3'
miRNA:   3'- -GAGCC---------CGUGCa--UG-UAGUCCGGGCg--CG- -5'
28098 5' -58.8 NC_005887.1 + 37573 0.66 0.449574
Target:  5'- cCUCGccGGCugG--CGUCAGcuuCCCGCGCu -3'
miRNA:   3'- -GAGC--CCGugCauGUAGUCc--GGGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 2684 0.66 0.446654
Target:  5'- -cUGGuGCGCGUgaaGCGUaCGGGCggcaagcggccgagCCGCGCg -3'
miRNA:   3'- gaGCC-CGUGCA---UGUA-GUCCG--------------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 12077 0.66 0.446654
Target:  5'- gUC-GGCACGUcGCucgGUCAGGUcaccgacgugcuggCCGCGCa -3'
miRNA:   3'- gAGcCCGUGCA-UG---UAGUCCG--------------GGCGCG- -5'
28098 5' -58.8 NC_005887.1 + 3841 0.66 0.439884
Target:  5'- aUCGGGCGCuucUACGUC-GGCaCCGaCGa -3'
miRNA:   3'- gAGCCCGUGc--AUGUAGuCCG-GGC-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.