Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28101 | 3' | -56.1 | NC_005887.1 | + | 32341 | 0.66 | 0.614267 |
Target: 5'- gCCGCGCGugAuGUGgUCGgCGAUCUu- -3' miRNA: 3'- -GGUGCGCugU-CGCgAGCaGCUAGGuc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 41823 | 0.66 | 0.647294 |
Target: 5'- gCGCGCGGCGgccgacGCGUUCaGaUCGA-CCAGa -3' miRNA: 3'- gGUGCGCUGU------CGCGAG-C-AGCUaGGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 1443 | 0.66 | 0.636285 |
Target: 5'- gCGCGCGGuagcccuuCGGCgGCUCGUCGucaCCGu -3' miRNA: 3'- gGUGCGCU--------GUCG-CGAGCAGCua-GGUc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 22431 | 0.66 | 0.63188 |
Target: 5'- aCCGgGCGGCAGCGUcaggGUCGAauagagguagacgCCGGg -3' miRNA: 3'- -GGUgCGCUGUCGCGag--CAGCUa------------GGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 15627 | 0.66 | 0.625273 |
Target: 5'- gCAgGCGGCcGgGCUCGcCGAUCaGGg -3' miRNA: 3'- gGUgCGCUGuCgCGAGCaGCUAGgUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 31505 | 0.66 | 0.636285 |
Target: 5'- gCCGCGCGcGCGGCGCggaugaacgcagUUGUCGcuucgCCAu -3' miRNA: 3'- -GGUGCGC-UGUCGCG------------AGCAGCua---GGUc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 13371 | 0.66 | 0.636285 |
Target: 5'- cCCG-GCGAUGGCGCUCG-CGcugaaggCCGGc -3' miRNA: 3'- -GGUgCGCUGUCGCGAGCaGCua-----GGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 33008 | 0.66 | 0.647294 |
Target: 5'- -uGCGCGACA-CGCUgcCGUCGAUaaucaaCAGc -3' miRNA: 3'- ggUGCGCUGUcGCGA--GCAGCUAg-----GUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 1496 | 0.66 | 0.603276 |
Target: 5'- gCGCGCGGCGGCuucGC-CGgUgGAUCCGa -3' miRNA: 3'- gGUGCGCUGUCG---CGaGC-AgCUAGGUc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 26438 | 0.66 | 0.647294 |
Target: 5'- cCCGCGCGGaa-CGCagGUCGG-CCAGc -3' miRNA: 3'- -GGUGCGCUgucGCGagCAGCUaGGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 15818 | 0.66 | 0.647294 |
Target: 5'- aCCACgagGCGcagguGCAGCGCUUGcgcggcgCGAUCgAGg -3' miRNA: 3'- -GGUG---CGC-----UGUCGCGAGCa------GCUAGgUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 33646 | 0.66 | 0.614267 |
Target: 5'- gCGCGCG-CuGCGCUCGgcgaggguuucaUUGAUCuCGGg -3' miRNA: 3'- gGUGCGCuGuCGCGAGC------------AGCUAG-GUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 17409 | 0.66 | 0.599984 |
Target: 5'- aUCACgucgGCGGCAuggcgaagaacaucGCGCUCGUCGAgcgCUAc -3' miRNA: 3'- -GGUG----CGCUGU--------------CGCGAGCAGCUa--GGUc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 25660 | 0.66 | 0.624172 |
Target: 5'- aCCGCcaGCcGCAGCGCgucgccaUCGUCGGUCa-- -3' miRNA: 3'- -GGUG--CGcUGUCGCG-------AGCAGCUAGguc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 19565 | 0.66 | 0.614267 |
Target: 5'- aCAacaGCGGCcGCGCcggCGUCGAgCCAa -3' miRNA: 3'- gGUg--CGCUGuCGCGa--GCAGCUaGGUc -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 2520 | 0.66 | 0.603276 |
Target: 5'- --gUGCGACGGCgGCcCGUCGcgcuuuAUCCAGc -3' miRNA: 3'- gguGCGCUGUCG-CGaGCAGC------UAGGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 6813 | 0.67 | 0.570488 |
Target: 5'- gCUGCGCGACuGGCGCUaCGUgGcgCgGGu -3' miRNA: 3'- -GGUGCGCUG-UCGCGA-GCAgCuaGgUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 544 | 0.67 | 0.59231 |
Target: 5'- gCCGCGCGccgcgccggauACAGCGCgaagacCGcCGG-CCAGa -3' miRNA: 3'- -GGUGCGC-----------UGUCGCGa-----GCaGCUaGGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 31277 | 0.67 | 0.59231 |
Target: 5'- gCCGCGuCGAUcGC-CUCGUCGAgcucgaCCGGc -3' miRNA: 3'- -GGUGC-GCUGuCGcGAGCAGCUa-----GGUC- -5' |
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28101 | 3' | -56.1 | NC_005887.1 | + | 15403 | 0.67 | 0.537084 |
Target: 5'- gCGCGCgGGCAGCGgaUCGUCGAcgacgcauacgugUUCGGu -3' miRNA: 3'- gGUGCG-CUGUCGCg-AGCAGCU-------------AGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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