miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28101 3' -56.1 NC_005887.1 + 276 1.1 0.000603
Target:  5'- cCCACGCGACAGCGCUCGUCGAUCCAGu -3'
miRNA:   3'- -GGUGCGCUGUCGCGAGCAGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 12386 0.78 0.115025
Target:  5'- uCCGCGCGGCGGUGUUCGcggcgcucgacaccgUCGAUCCc- -3'
miRNA:   3'- -GGUGCGCUGUCGCGAGC---------------AGCUAGGuc -5'
28101 3' -56.1 NC_005887.1 + 18407 0.76 0.177104
Target:  5'- cCUACGCcGCGGCGCUCGUCG--UCAGc -3'
miRNA:   3'- -GGUGCGcUGUCGCGAGCAGCuaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 26966 0.75 0.208067
Target:  5'- gCGCGCGAuCAGCGCggCGUCGA-CCu- -3'
miRNA:   3'- gGUGCGCU-GUCGCGa-GCAGCUaGGuc -5'
28101 3' -56.1 NC_005887.1 + 2887 0.74 0.219384
Target:  5'- aCACGCGcuuuucaggcacGCGGCcCUUGUCGAUCCAc -3'
miRNA:   3'- gGUGCGC------------UGUCGcGAGCAGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 28800 0.73 0.256512
Target:  5'- cUCGgGCGGCAGCGCaUCGcCGAUCgCAu -3'
miRNA:   3'- -GGUgCGCUGUCGCG-AGCaGCUAG-GUc -5'
28101 3' -56.1 NC_005887.1 + 8402 0.73 0.263178
Target:  5'- gCACGCGAC-GUGCUCGcCGAgcgCCGu -3'
miRNA:   3'- gGUGCGCUGuCGCGAGCaGCUa--GGUc -5'
28101 3' -56.1 NC_005887.1 + 1987 0.73 0.276933
Target:  5'- gCGCGCGACGgcggcacggccGCGCUCGaCGG-CCAGu -3'
miRNA:   3'- gGUGCGCUGU-----------CGCGAGCaGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 7990 0.73 0.276933
Target:  5'- aUACGCGG-GGCGCUCGUC--UCCAGc -3'
miRNA:   3'- gGUGCGCUgUCGCGAGCAGcuAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 26672 0.73 0.276933
Target:  5'- gCCGCGCGGCGGUgaGCUgGUCGAgcUCGGc -3'
miRNA:   3'- -GGUGCGCUGUCG--CGAgCAGCUa-GGUC- -5'
28101 3' -56.1 NC_005887.1 + 2412 0.72 0.298631
Target:  5'- aCACGCGAU-GCGCgUCGUCGAcgcgcCCGGc -3'
miRNA:   3'- gGUGCGCUGuCGCG-AGCAGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 36311 0.72 0.313814
Target:  5'- uCUGCGCGGCGGUcgacGCcgCGcacUCGAUCCAGg -3'
miRNA:   3'- -GGUGCGCUGUCG----CGa-GC---AGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 40533 0.72 0.321622
Target:  5'- gCGCGCGGCAGCGa-CGaCGGUCUGGc -3'
miRNA:   3'- gGUGCGCUGUCGCgaGCaGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 22927 0.71 0.337672
Target:  5'- uCCGCcuuuuuCGGCAGCGUgcCGUCGGUCCGu -3'
miRNA:   3'- -GGUGc-----GCUGUCGCGa-GCAGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 16960 0.7 0.381185
Target:  5'- aCCGCGCGGCGGCaaugucggcgaGCUCGacuacggcuacgugcCGAUCCGc -3'
miRNA:   3'- -GGUGCGCUGUCG-----------CGAGCa--------------GCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 18571 0.7 0.398326
Target:  5'- gCGgGCGACA-UGCUCGUCGcggcguUCCAGu -3'
miRNA:   3'- gGUgCGCUGUcGCGAGCAGCu-----AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 32728 0.7 0.406615
Target:  5'- cCCACgGCGggguagcGCGGCGCUCGcgugCGcgCCGGc -3'
miRNA:   3'- -GGUG-CGC-------UGUCGCGAGCa---GCuaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 12197 0.69 0.426373
Target:  5'- aCCGCGaagGACAGCGCcgCGcCGGgcgcgCCGGa -3'
miRNA:   3'- -GGUGCg--CUGUCGCGa-GCaGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 18377 0.69 0.426373
Target:  5'- aCgGCGCGcCGGCGCUCG-CGAaCCc- -3'
miRNA:   3'- -GgUGCGCuGUCGCGAGCaGCUaGGuc -5'
28101 3' -56.1 NC_005887.1 + 38569 0.69 0.426373
Target:  5'- aCgAUGCGgucGCGGCcCUCGUCGAgCCAGu -3'
miRNA:   3'- -GgUGCGC---UGUCGcGAGCAGCUaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.