miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28101 3' -56.1 NC_005887.1 + 15403 0.67 0.537084
Target:  5'- gCGCGCgGGCAGCGgaUCGUCGAcgacgcauacgugUUCGGu -3'
miRNA:   3'- gGUGCG-CUGUCGCg-AGCAGCU-------------AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 3944 0.68 0.516945
Target:  5'- uCCGCgGCGcGCAGaaGCUCGUCGAcCCGc -3'
miRNA:   3'- -GGUG-CGC-UGUCg-CGAGCAGCUaGGUc -5'
28101 3' -56.1 NC_005887.1 + 27347 0.68 0.516945
Target:  5'- gCCACGCGcaGCGGCGCgcagacgagcgUCGgcaucgucUCGAUCCc- -3'
miRNA:   3'- -GGUGCGC--UGUCGCG-----------AGC--------AGCUAGGuc -5'
28101 3' -56.1 NC_005887.1 + 2452 0.68 0.527508
Target:  5'- gCUGCGCuACGGCGC-CGUCGA-CgAGg -3'
miRNA:   3'- -GGUGCGcUGUCGCGaGCAGCUaGgUC- -5'
28101 3' -56.1 NC_005887.1 + 11552 0.68 0.527508
Target:  5'- uCgGCGCG-CAGCGCgCGgCGGUCgCGGa -3'
miRNA:   3'- -GgUGCGCuGUCGCGaGCaGCUAG-GUC- -5'
28101 3' -56.1 NC_005887.1 + 26130 0.68 0.527508
Target:  5'- aCgGCGCGcuucguuucGCGGCGCucgacgacguccUCGUCGAUCguGu -3'
miRNA:   3'- -GgUGCGC---------UGUCGCG------------AGCAGCUAGguC- -5'
28101 3' -56.1 NC_005887.1 + 4860 0.68 0.527508
Target:  5'- cCCcCGUG-CAGCGCaCGaUCGAUCCGc -3'
miRNA:   3'- -GGuGCGCuGUCGCGaGC-AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 35718 0.68 0.527508
Target:  5'- uCCACGCGu--GCaGCUCGgucgCGGUCguGg -3'
miRNA:   3'- -GGUGCGCuguCG-CGAGCa---GCUAGguC- -5'
28101 3' -56.1 NC_005887.1 + 880 0.67 0.534951
Target:  5'- cCCGCGCcgccggacgagucaGGCGGC-CUCGgcuUCGAUCCGc -3'
miRNA:   3'- -GGUGCG--------------CUGUCGcGAGC---AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 15564 0.68 0.485792
Target:  5'- gCGCGCGACcGCGCUCGauUCGcugaucgCCGa -3'
miRNA:   3'- gGUGCGCUGuCGCGAGC--AGCua-----GGUc -5'
28101 3' -56.1 NC_005887.1 + 8680 0.68 0.485792
Target:  5'- uUCAuCGCGACGGUGCagGgcccggCGAUCCGc -3'
miRNA:   3'- -GGU-GCGCUGUCGCGagCa-----GCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 17753 0.69 0.43598
Target:  5'- gCCGCGCGGCugauGGCGCcCGguUCGAaggacuUCCGGu -3'
miRNA:   3'- -GGUGCGCUG----UCGCGaGC--AGCU------AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 36311 0.72 0.313814
Target:  5'- uCUGCGCGGCGGUcgacGCcgCGcacUCGAUCCAGg -3'
miRNA:   3'- -GGUGCGCUGUCG----CGa-GC---AGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 40533 0.72 0.321622
Target:  5'- gCGCGCGGCAGCGa-CGaCGGUCUGGc -3'
miRNA:   3'- gGUGCGCUGUCGCgaGCaGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 16960 0.7 0.381185
Target:  5'- aCCGCGCGGCGGCaaugucggcgaGCUCGacuacggcuacgugcCGAUCCGc -3'
miRNA:   3'- -GGUGCGCUGUCG-----------CGAGCa--------------GCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 18571 0.7 0.398326
Target:  5'- gCGgGCGACA-UGCUCGUCGcggcguUCCAGu -3'
miRNA:   3'- gGUgCGCUGUcGCGAGCAGCu-----AGGUC- -5'
28101 3' -56.1 NC_005887.1 + 32728 0.7 0.406615
Target:  5'- cCCACgGCGggguagcGCGGCGCUCGcgugCGcgCCGGc -3'
miRNA:   3'- -GGUG-CGC-------UGUCGCGAGCa---GCuaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 4909 0.69 0.426373
Target:  5'- cCgGCGCGA-GGUGUUCGUgcgccUGAUCCAGa -3'
miRNA:   3'- -GgUGCGCUgUCGCGAGCA-----GCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 12197 0.69 0.426373
Target:  5'- aCCGCGaagGACAGCGCcgCGcCGGgcgcgCCGGa -3'
miRNA:   3'- -GGUGCg--CUGUCGCGa-GCaGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 18377 0.69 0.426373
Target:  5'- aCgGCGCGcCGGCGCUCG-CGAaCCc- -3'
miRNA:   3'- -GgUGCGCuGUCGCGAGCaGCUaGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.