miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28101 3' -56.1 NC_005887.1 + 276 1.1 0.000603
Target:  5'- cCCACGCGACAGCGCUCGUCGAUCCAGu -3'
miRNA:   3'- -GGUGCGCUGUCGCGAGCAGCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 544 0.67 0.59231
Target:  5'- gCCGCGCGccgcgccggauACAGCGCgaagacCGcCGG-CCAGa -3'
miRNA:   3'- -GGUGCGC-----------UGUCGCGa-----GCaGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 880 0.67 0.534951
Target:  5'- cCCGCGCcgccggacgagucaGGCGGC-CUCGgcuUCGAUCCGc -3'
miRNA:   3'- -GGUGCG--------------CUGUCGcGAGC---AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 1381 0.67 0.581378
Target:  5'- cCCGCGCGuC-GCGCUCGUUcAUCa-- -3'
miRNA:   3'- -GGUGCGCuGuCGCGAGCAGcUAGguc -5'
28101 3' -56.1 NC_005887.1 + 1443 0.66 0.636285
Target:  5'- gCGCGCGGuagcccuuCGGCgGCUCGUCGucaCCGu -3'
miRNA:   3'- gGUGCGCU--------GUCG-CGAGCAGCua-GGUc -5'
28101 3' -56.1 NC_005887.1 + 1496 0.66 0.603276
Target:  5'- gCGCGCGGCGGCuucGC-CGgUgGAUCCGa -3'
miRNA:   3'- gGUGCGCUGUCG---CGaGC-AgCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 1987 0.73 0.276933
Target:  5'- gCGCGCGACGgcggcacggccGCGCUCGaCGG-CCAGu -3'
miRNA:   3'- gGUGCGCUGU-----------CGCGAGCaGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 2412 0.72 0.298631
Target:  5'- aCACGCGAU-GCGCgUCGUCGAcgcgcCCGGc -3'
miRNA:   3'- gGUGCGCUGuCGCG-AGCAGCUa----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 2452 0.68 0.527508
Target:  5'- gCUGCGCuACGGCGC-CGUCGA-CgAGg -3'
miRNA:   3'- -GGUGCGcUGUCGCGaGCAGCUaGgUC- -5'
28101 3' -56.1 NC_005887.1 + 2520 0.66 0.603276
Target:  5'- --gUGCGACGGCgGCcCGUCGcgcuuuAUCCAGc -3'
miRNA:   3'- gguGCGCUGUCG-CGaGCAGC------UAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 2887 0.74 0.219384
Target:  5'- aCACGCGcuuuucaggcacGCGGCcCUUGUCGAUCCAc -3'
miRNA:   3'- gGUGCGC------------UGUCGcGAGCAGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 3944 0.68 0.516945
Target:  5'- uCCGCgGCGcGCAGaaGCUCGUCGAcCCGc -3'
miRNA:   3'- -GGUG-CGC-UGUCg-CGAGCAGCUaGGUc -5'
28101 3' -56.1 NC_005887.1 + 4860 0.68 0.527508
Target:  5'- cCCcCGUG-CAGCGCaCGaUCGAUCCGc -3'
miRNA:   3'- -GGuGCGCuGUCGCGaGC-AGCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 4909 0.69 0.426373
Target:  5'- cCgGCGCGA-GGUGUUCGUgcgccUGAUCCAGa -3'
miRNA:   3'- -GgUGCGCUgUCGCGAGCA-----GCUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 5478 0.69 0.45556
Target:  5'- cCCACGUuGACcaccaggaacaGGCGCgCGUCgcGAUCCAGc -3'
miRNA:   3'- -GGUGCG-CUG-----------UCGCGaGCAG--CUAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 6813 0.67 0.570488
Target:  5'- gCUGCGCGACuGGCGCUaCGUgGcgCgGGu -3'
miRNA:   3'- -GGUGCGCUG-UCGCGA-GCAgCuaGgUC- -5'
28101 3' -56.1 NC_005887.1 + 7990 0.73 0.276933
Target:  5'- aUACGCGG-GGCGCUCGUC--UCCAGc -3'
miRNA:   3'- gGUGCGCUgUCGCGAGCAGcuAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 8402 0.73 0.263178
Target:  5'- gCACGCGAC-GUGCUCGcCGAgcgCCGu -3'
miRNA:   3'- gGUGCGCUGuCGCGAGCaGCUa--GGUc -5'
28101 3' -56.1 NC_005887.1 + 8680 0.68 0.485792
Target:  5'- uUCAuCGCGACGGUGCagGgcccggCGAUCCGc -3'
miRNA:   3'- -GGU-GCGCUGUCGCGagCa-----GCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 11552 0.68 0.527508
Target:  5'- uCgGCGCG-CAGCGCgCGgCGGUCgCGGa -3'
miRNA:   3'- -GgUGCGCuGUCGCGaGCaGCUAG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.