miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 5' -58.5 NC_005887.1 + 4782 0.66 0.475606
Target:  5'- gCCGCgGCUCcGCGA--GC-CGCCAa -3'
miRNA:   3'- gGGCGaCGAGaCGCUuaCGcGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 32320 0.66 0.465527
Target:  5'- gCCGCUGUUCgugccagcGCGGccGCGCGUg-- -3'
miRNA:   3'- gGGCGACGAGa-------CGCUuaCGCGCGguc -5'
28102 5' -58.5 NC_005887.1 + 1661 0.66 0.45556
Target:  5'- uCCUGCcaGCcgUGCGc--GCGCGCCAGg -3'
miRNA:   3'- -GGGCGa-CGagACGCuuaCGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 31385 0.66 0.45556
Target:  5'- -aCGC-GCUCgGCGuagcGGUGCGUGCCGu -3'
miRNA:   3'- ggGCGaCGAGaCGC----UUACGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 25003 0.66 0.43598
Target:  5'- gCgGUUGUaCUGCauGUGCGCGUCAGc -3'
miRNA:   3'- gGgCGACGaGACGcuUACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 8325 0.67 0.426373
Target:  5'- aCgCGCUGUUUcGCGAGgcauucGCGUGCCGu -3'
miRNA:   3'- -GgGCGACGAGaCGCUUa-----CGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 371 0.67 0.416893
Target:  5'- gCCgUGCUGCUgauagGCGA--GCGCGCCGc -3'
miRNA:   3'- -GG-GCGACGAga---CGCUuaCGCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 13940 0.67 0.416893
Target:  5'- gCCUGCgcgcGCUCggcUGCGAcGUGCGCGUg-- -3'
miRNA:   3'- -GGGCGa---CGAG---ACGCU-UACGCGCGguc -5'
28102 5' -58.5 NC_005887.1 + 14794 0.67 0.416893
Target:  5'- uUCCGCUGCgugCUGCacaccauGAUGgaGCGCCGc -3'
miRNA:   3'- -GGGCGACGa--GACGc------UUACg-CGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 15967 0.67 0.415952
Target:  5'- aCCCGCUGUcgcaguUC-GuCGAggaugucGUGCGCGCgCAGa -3'
miRNA:   3'- -GGGCGACG------AGaC-GCU-------UACGCGCG-GUC- -5'
28102 5' -58.5 NC_005887.1 + 12322 0.67 0.415952
Target:  5'- gCUGCaGCUCaGCGAAcUGCGUacgucgcucgccgGCCAGg -3'
miRNA:   3'- gGGCGaCGAGaCGCUU-ACGCG-------------CGGUC- -5'
28102 5' -58.5 NC_005887.1 + 23978 0.67 0.398326
Target:  5'- gCCCaCUGCUCgagcGCGAG-GCGgCGCuCGGg -3'
miRNA:   3'- -GGGcGACGAGa---CGCUUaCGC-GCG-GUC- -5'
28102 5' -58.5 NC_005887.1 + 41949 0.67 0.380297
Target:  5'- gCCCgGCgUGCUC-GCGuGGUGCGUGCgCGGc -3'
miRNA:   3'- -GGG-CG-ACGAGaCGC-UUACGCGCG-GUC- -5'
28102 5' -58.5 NC_005887.1 + 11077 0.68 0.372364
Target:  5'- gCCGCUGCUCaaacgauuccgcgugGCGcaucggcuGGUGCGCGCgAa -3'
miRNA:   3'- gGGCGACGAGa--------------CGC--------UUACGCGCGgUc -5'
28102 5' -58.5 NC_005887.1 + 3972 0.68 0.371489
Target:  5'- gCCGUUGCUC-GCGAAcgaggagGCGUGCUu- -3'
miRNA:   3'- gGGCGACGAGaCGCUUa------CGCGCGGuc -5'
28102 5' -58.5 NC_005887.1 + 32742 0.68 0.362822
Target:  5'- -gCGCggcGCUC-GCG--UGCGCGCCGGc -3'
miRNA:   3'- ggGCGa--CGAGaCGCuuACGCGCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 10714 0.68 0.361963
Target:  5'- aCUgGCUGCUCUGCcgggaugGAAagugGCG-GCCAGu -3'
miRNA:   3'- -GGgCGACGAGACG-------CUUa---CGCgCGGUC- -5'
28102 5' -58.5 NC_005887.1 + 24931 0.68 0.354296
Target:  5'- aCCGUUGUcgaUC-GCGAcgcGUGCGCGCgGGc -3'
miRNA:   3'- gGGCGACG---AGaCGCU---UACGCGCGgUC- -5'
28102 5' -58.5 NC_005887.1 + 2408 0.68 0.345912
Target:  5'- gCCGCUgGCUUcgagGCGAAgccCGCGCCGa -3'
miRNA:   3'- gGGCGA-CGAGa---CGCUUac-GCGCGGUc -5'
28102 5' -58.5 NC_005887.1 + 28478 0.68 0.337672
Target:  5'- gCCGCUucaGCUC-GaCGAAguagacGCGCGCCGGc -3'
miRNA:   3'- gGGCGA---CGAGaC-GCUUa-----CGCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.