miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 5' -46.1 NC_005887.1 + 15887 0.66 0.987242
Target:  5'- aGCAgcuCG-GUGCGCuc-GACGCGCa- -3'
miRNA:   3'- -CGUau-GCaUACGCGuauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 26418 0.66 0.987242
Target:  5'- aGCugGCGgccGCGCGgGAACGCGCg- -3'
miRNA:   3'- -CGuaUGCauaCGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 13007 0.66 0.985303
Target:  5'- aGCGUcGCGgcuUGCuGCGgcagGGACGCGCUc -3'
miRNA:   3'- -CGUA-UGCau-ACG-CGUa---UUUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 39909 0.66 0.985303
Target:  5'- aGCAUACG-GUGCGCGcAGAUcgagccggGCGCg- -3'
miRNA:   3'- -CGUAUGCaUACGCGUaUUUG--------CGUGau -5'
28105 5' -46.1 NC_005887.1 + 27856 0.66 0.983146
Target:  5'- cGCcUGCGUcgGCGCcgucGUcAugGCGCUc -3'
miRNA:   3'- -CGuAUGCAuaCGCG----UAuUugCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 32775 0.66 0.983146
Target:  5'- uGCAgcCGgcucGUGCGCAggaucGGCGCGCg- -3'
miRNA:   3'- -CGUauGCa---UACGCGUau---UUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 41004 0.66 0.983146
Target:  5'- aGCAUGCGcUcgGCGUugccgaacucgGUGcGCGCGCg- -3'
miRNA:   3'- -CGUAUGC-AuaCGCG-----------UAUuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32743 0.66 0.980759
Target:  5'- cGCGgcgcuCGcGUGCGCGccGGCGCGCg- -3'
miRNA:   3'- -CGUau---GCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 34717 0.66 0.980759
Target:  5'- cGCuUGCG-GUGCGCGgcGAUGUACa- -3'
miRNA:   3'- -CGuAUGCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 9924 0.66 0.980759
Target:  5'- cCGUACG-AUGUGCG---GCGCGCg- -3'
miRNA:   3'- cGUAUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 41267 0.67 0.978128
Target:  5'- gGCAaugGCGccgucgaccUGCGCAcGGGCGCGCUGc -3'
miRNA:   3'- -CGUa--UGCau-------ACGCGUaUUUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 15967 0.67 0.978128
Target:  5'- cGCAgguCGgccagcUGCGCGUcGAGCGCACc- -3'
miRNA:   3'- -CGUau-GCau----ACGCGUA-UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32654 0.67 0.978128
Target:  5'- gGCugcACGUgcacuggaacAUGCGCGUc-ACGCACUGg -3'
miRNA:   3'- -CGua-UGCA----------UACGCGUAuuUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 28600 0.67 0.978128
Target:  5'- aGCAgccCGgc-GCGCGUGAGCGUGCc- -3'
miRNA:   3'- -CGUau-GCauaCGCGUAUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 5149 0.67 0.972085
Target:  5'- uGCccgACGUcgGCGCGccgcugaugcUGAugGCACg- -3'
miRNA:   3'- -CGua-UGCAuaCGCGU----------AUUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 41704 0.67 0.972085
Target:  5'- aGCGUGCGcc-GCGCA--GACGCAg-- -3'
miRNA:   3'- -CGUAUGCauaCGCGUauUUGCGUgau -5'
28105 5' -46.1 NC_005887.1 + 11729 0.67 0.968649
Target:  5'- cGCGcACGgc-GCGCAcGAAUGCACg- -3'
miRNA:   3'- -CGUaUGCauaCGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 30560 0.67 0.964922
Target:  5'- uGCAguuuUGCG-GUGCGCA---ACGCACg- -3'
miRNA:   3'- -CGU----AUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 23503 0.67 0.964922
Target:  5'- uGCcgACGUGUucggccGCGCugacGAACGCGCg- -3'
miRNA:   3'- -CGuaUGCAUA------CGCGua--UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 16012 0.68 0.960895
Target:  5'- gGCGUGCG---GCGCGUGgccGGCGCAUc- -3'
miRNA:   3'- -CGUAUGCauaCGCGUAU---UUGCGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.