Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28107 | 3' | -54.2 | NC_005887.1 | + | 37239 | 0.66 | 0.69386 |
Target: 5'- ---aCGGCUUGAgcUCGACAcccGGCgGCACg -3' miRNA: 3'- uaagGCCGGACU--AGCUGUu--CUG-CGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 4920 | 0.66 | 0.682573 |
Target: 5'- uGUUCgUGcGCCUGAUCcaGAUccucgggauggAAGACGCGCa -3' miRNA: 3'- -UAAG-GC-CGGACUAG--CUG-----------UUCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 11031 | 0.66 | 0.682573 |
Target: 5'- -gUCCaGCC-GAUCuGCGuGGACGCGCa -3' miRNA: 3'- uaAGGcCGGaCUAGcUGU-UCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 37683 | 0.66 | 0.671234 |
Target: 5'- ---aCGGCCUGGUguaUGcGCGuGACGCGCg -3' miRNA: 3'- uaagGCCGGACUA---GC-UGUuCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 13478 | 0.66 | 0.671234 |
Target: 5'- ----aGGCgCUGAagGACAAGACGguCa -3' miRNA: 3'- uaaggCCG-GACUagCUGUUCUGCguG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 16914 | 0.66 | 0.659855 |
Target: 5'- --gCCGaGCa-GAUCGGCAAGACgacggGCGCg -3' miRNA: 3'- uaaGGC-CGgaCUAGCUGUUCUG-----CGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 7563 | 0.66 | 0.659855 |
Target: 5'- -aUCCGGCCUcg-UGGC-AGGCGUAUc -3' miRNA: 3'- uaAGGCCGGAcuaGCUGuUCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 10956 | 0.66 | 0.659855 |
Target: 5'- --gCCGGCUgcaGGUgcacCGACAGGAUGUGCu -3' miRNA: 3'- uaaGGCCGGa--CUA----GCUGUUCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 40719 | 0.66 | 0.648448 |
Target: 5'- -gUgCGGCCggUGAUCGGC---GCGCGCu -3' miRNA: 3'- uaAgGCCGG--ACUAGCUGuucUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 4017 | 0.66 | 0.648448 |
Target: 5'- ---aCGGCg-GGUCGACGAGcuucuGCGCGCc -3' miRNA: 3'- uaagGCCGgaCUAGCUGUUC-----UGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 34631 | 0.66 | 0.648448 |
Target: 5'- -aUUC-GCCguucgcGUCGACGAGGCGCGCc -3' miRNA: 3'- uaAGGcCGGac----UAGCUGUUCUGCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 15038 | 0.66 | 0.637025 |
Target: 5'- ---gCGGCCUGcgCGGCGuAGGCGUc- -3' miRNA: 3'- uaagGCCGGACuaGCUGU-UCUGCGug -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 20875 | 0.66 | 0.637025 |
Target: 5'- ---gCGGCCUGAaUGAU-AGugGCGCc -3' miRNA: 3'- uaagGCCGGACUaGCUGuUCugCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 12598 | 0.67 | 0.625598 |
Target: 5'- --cCCGGCCgcGAcgcUCGGCGugcuGACGCAg -3' miRNA: 3'- uaaGGCCGGa-CU---AGCUGUu---CUGCGUg -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 12650 | 0.67 | 0.625598 |
Target: 5'- -gUCgCGGCCgGGUCGGC-GGACaccauGCGCa -3' miRNA: 3'- uaAG-GCCGGaCUAGCUGuUCUG-----CGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 5532 | 0.67 | 0.625598 |
Target: 5'- --aUCGGCCUGcGUCGugGuGGAUGCGg -3' miRNA: 3'- uaaGGCCGGAC-UAGCugU-UCUGCGUg -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 13892 | 0.67 | 0.614177 |
Target: 5'- --aCCGGCUcgUGcgcGUCGGCAuucGugGCACg -3' miRNA: 3'- uaaGGCCGG--AC---UAGCUGUu--CugCGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 40603 | 0.67 | 0.607331 |
Target: 5'- gGUUCCucgacgagcguguguGGCCgcacAUCGGCAAGACagGCACu -3' miRNA: 3'- -UAAGG---------------CCGGac--UAGCUGUUCUG--CGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 9332 | 0.67 | 0.602772 |
Target: 5'- -gUCCGGUa--GUCGAUggGACgGCACc -3' miRNA: 3'- uaAGGCCGgacUAGCUGuuCUG-CGUG- -5' |
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28107 | 3' | -54.2 | NC_005887.1 | + | 31394 | 0.67 | 0.602772 |
Target: 5'- ---aCGGCCcGGUCGGCAcgugGGACGUg- -3' miRNA: 3'- uaagGCCGGaCUAGCUGU----UCUGCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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