miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 5' -60.6 NC_005887.1 + 12702 0.66 0.362424
Target:  5'- aGGgUCACGc-GCGCacgcuGGUCGCGCAg -3'
miRNA:   3'- cUCgAGUGCaaCGCGgu---CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 801 0.66 0.362424
Target:  5'- cGAGCUCGCGaucGCgaucaacaGCCAuGCuCGCGCGa -3'
miRNA:   3'- -CUCGAGUGCaa-CG--------CGGUcCG-GCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 28181 0.66 0.362424
Target:  5'- cGAGCaacaUCGgGcugUGCGCCgcaucAGcGCCGCGCGu -3'
miRNA:   3'- -CUCG----AGUgCa--ACGCGG-----UC-CGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 14295 0.66 0.353934
Target:  5'- -cGCUCACGcUGaacccgcaaGCgCAGGCCGaCGCc -3'
miRNA:   3'- cuCGAGUGCaACg--------CG-GUCCGGC-GCGu -5'
28107 5' -60.6 NC_005887.1 + 27331 0.66 0.353934
Target:  5'- cGGC-CACGUcgacUGCGCCAcgcgcagcGGC-GCGCAg -3'
miRNA:   3'- cUCGaGUGCA----ACGCGGU--------CCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 33290 0.66 0.353934
Target:  5'- gGAGCacggCGCGaccgaGUGCCAGuGCgGCGCGu -3'
miRNA:   3'- -CUCGa---GUGCaa---CGCGGUC-CGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 4237 0.66 0.345585
Target:  5'- -uGCUCGCGccGaCGCUcGGCCGCacGCAg -3'
miRNA:   3'- cuCGAGUGCaaC-GCGGuCCGGCG--CGU- -5'
28107 5' -60.6 NC_005887.1 + 24943 0.66 0.345585
Target:  5'- -cGCgaCGCG-UGCGCgCGGGCCGCcuuGCGc -3'
miRNA:   3'- cuCGa-GUGCaACGCG-GUCCGGCG---CGU- -5'
28107 5' -60.6 NC_005887.1 + 14099 0.66 0.337379
Target:  5'- -cGuCUCAgGcUGCGCC-GGCgGCGCGc -3'
miRNA:   3'- cuC-GAGUgCaACGCGGuCCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 32823 0.66 0.336566
Target:  5'- cGGCUgCAUGgcgcGCGCCGGcgcgcacgcgagcGCCGCGCu -3'
miRNA:   3'- cUCGA-GUGCaa--CGCGGUC-------------CGGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 24626 0.66 0.334136
Target:  5'- aAGCUgACGgcgaucauggGCGCCcggccgaaggugcGGCCGCGCGu -3'
miRNA:   3'- cUCGAgUGCaa--------CGCGGu------------CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 5497 0.66 0.329315
Target:  5'- cAGCgggCGCGUggucGCGCC-GGUCGCuGCGg -3'
miRNA:   3'- cUCGa--GUGCAa---CGCGGuCCGGCG-CGU- -5'
28107 5' -60.6 NC_005887.1 + 25011 0.66 0.329315
Target:  5'- cAGCUCGCGccgGCgGCCGccGGCCagccgguaGCGCAg -3'
miRNA:   3'- cUCGAGUGCaa-CG-CGGU--CCGG--------CGCGU- -5'
28107 5' -60.6 NC_005887.1 + 19184 0.66 0.329315
Target:  5'- uGAGCggCGCGg-GCGUggagaCAGGCgGCGCGg -3'
miRNA:   3'- -CUCGa-GUGCaaCGCG-----GUCCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 40430 0.66 0.321395
Target:  5'- -cGCgCGCGacgGCGgCAcGGCCGCGCu -3'
miRNA:   3'- cuCGaGUGCaa-CGCgGU-CCGGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 29861 0.66 0.313617
Target:  5'- aGGCgaugaaCACGUccUGCGgCAGGCCGaGCGu -3'
miRNA:   3'- cUCGa-----GUGCA--ACGCgGUCCGGCgCGU- -5'
28107 5' -60.6 NC_005887.1 + 10097 0.67 0.305984
Target:  5'- -uGC-CGCuGUUcGUGCCAgcgcGGCCGCGCGu -3'
miRNA:   3'- cuCGaGUG-CAA-CGCGGU----CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 34270 0.67 0.305984
Target:  5'- -cGCUCGCGgcuUGCGCaugccgucGCCGUGCGg -3'
miRNA:   3'- cuCGAGUGCa--ACGCGguc-----CGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 5698 0.67 0.298493
Target:  5'- cGAGCUCGCGUauCGCCuucaCCGCGUc -3'
miRNA:   3'- -CUCGAGUGCAacGCGGucc-GGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 29422 0.67 0.298493
Target:  5'- -cGCUCGCGgc-UGCCGGGuucuCCGCGUAc -3'
miRNA:   3'- cuCGAGUGCaacGCGGUCC----GGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.