Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 12702 | 0.66 | 0.362424 |
Target: 5'- aGGgUCACGc-GCGCacgcuGGUCGCGCAg -3' miRNA: 3'- cUCgAGUGCaaCGCGgu---CCGGCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 801 | 0.66 | 0.362424 |
Target: 5'- cGAGCUCGCGaucGCgaucaacaGCCAuGCuCGCGCGa -3' miRNA: 3'- -CUCGAGUGCaa-CG--------CGGUcCG-GCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 28181 | 0.66 | 0.362424 |
Target: 5'- cGAGCaacaUCGgGcugUGCGCCgcaucAGcGCCGCGCGu -3' miRNA: 3'- -CUCG----AGUgCa--ACGCGG-----UC-CGGCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 14295 | 0.66 | 0.353934 |
Target: 5'- -cGCUCACGcUGaacccgcaaGCgCAGGCCGaCGCc -3' miRNA: 3'- cuCGAGUGCaACg--------CG-GUCCGGC-GCGu -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 27331 | 0.66 | 0.353934 |
Target: 5'- cGGC-CACGUcgacUGCGCCAcgcgcagcGGC-GCGCAg -3' miRNA: 3'- cUCGaGUGCA----ACGCGGU--------CCGgCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 33290 | 0.66 | 0.353934 |
Target: 5'- gGAGCacggCGCGaccgaGUGCCAGuGCgGCGCGu -3' miRNA: 3'- -CUCGa---GUGCaa---CGCGGUC-CGgCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 4237 | 0.66 | 0.345585 |
Target: 5'- -uGCUCGCGccGaCGCUcGGCCGCacGCAg -3' miRNA: 3'- cuCGAGUGCaaC-GCGGuCCGGCG--CGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 24943 | 0.66 | 0.345585 |
Target: 5'- -cGCgaCGCG-UGCGCgCGGGCCGCcuuGCGc -3' miRNA: 3'- cuCGa-GUGCaACGCG-GUCCGGCG---CGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 14099 | 0.66 | 0.337379 |
Target: 5'- -cGuCUCAgGcUGCGCC-GGCgGCGCGc -3' miRNA: 3'- cuC-GAGUgCaACGCGGuCCGgCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 32823 | 0.66 | 0.336566 |
Target: 5'- cGGCUgCAUGgcgcGCGCCGGcgcgcacgcgagcGCCGCGCu -3' miRNA: 3'- cUCGA-GUGCaa--CGCGGUC-------------CGGCGCGu -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 24626 | 0.66 | 0.334136 |
Target: 5'- aAGCUgACGgcgaucauggGCGCCcggccgaaggugcGGCCGCGCGu -3' miRNA: 3'- cUCGAgUGCaa--------CGCGGu------------CCGGCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 5497 | 0.66 | 0.329315 |
Target: 5'- cAGCgggCGCGUggucGCGCC-GGUCGCuGCGg -3' miRNA: 3'- cUCGa--GUGCAa---CGCGGuCCGGCG-CGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 25011 | 0.66 | 0.329315 |
Target: 5'- cAGCUCGCGccgGCgGCCGccGGCCagccgguaGCGCAg -3' miRNA: 3'- cUCGAGUGCaa-CG-CGGU--CCGG--------CGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 19184 | 0.66 | 0.329315 |
Target: 5'- uGAGCggCGCGg-GCGUggagaCAGGCgGCGCGg -3' miRNA: 3'- -CUCGa-GUGCaaCGCG-----GUCCGgCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 40430 | 0.66 | 0.321395 |
Target: 5'- -cGCgCGCGacgGCGgCAcGGCCGCGCu -3' miRNA: 3'- cuCGaGUGCaa-CGCgGU-CCGGCGCGu -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 29861 | 0.66 | 0.313617 |
Target: 5'- aGGCgaugaaCACGUccUGCGgCAGGCCGaGCGu -3' miRNA: 3'- cUCGa-----GUGCA--ACGCgGUCCGGCgCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 10097 | 0.67 | 0.305984 |
Target: 5'- -uGC-CGCuGUUcGUGCCAgcgcGGCCGCGCGu -3' miRNA: 3'- cuCGaGUG-CAA-CGCGGU----CCGGCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 34270 | 0.67 | 0.305984 |
Target: 5'- -cGCUCGCGgcuUGCGCaugccgucGCCGUGCGg -3' miRNA: 3'- cuCGAGUGCa--ACGCGguc-----CGGCGCGU- -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 5698 | 0.67 | 0.298493 |
Target: 5'- cGAGCUCGCGUauCGCCuucaCCGCGUc -3' miRNA: 3'- -CUCGAGUGCAacGCGGucc-GGCGCGu -5' |
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28107 | 5' | -60.6 | NC_005887.1 | + | 29422 | 0.67 | 0.298493 |
Target: 5'- -cGCUCGCGgc-UGCCGGGuucuCCGCGUAc -3' miRNA: 3'- cuCGAGUGCaacGCGGUCC----GGCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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