miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 5' -60.6 NC_005887.1 + 33290 0.66 0.353934
Target:  5'- gGAGCacggCGCGaccgaGUGCCAGuGCgGCGCGu -3'
miRNA:   3'- -CUCGa---GUGCaa---CGCGGUC-CGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 11514 0.67 0.283227
Target:  5'- cGAGCUgCGCGUUGCGauCCAugaucgcGGCCuguuGCGCu -3'
miRNA:   3'- -CUCGA-GUGCAACGC--GGU-------CCGG----CGCGu -5'
28107 5' -60.6 NC_005887.1 + 29422 0.67 0.298493
Target:  5'- -cGCUCGCGgc-UGCCGGGuucuCCGCGUAc -3'
miRNA:   3'- cuCGAGUGCaacGCGGUCC----GGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 5698 0.67 0.298493
Target:  5'- cGAGCUCGCGUauCGCCuucaCCGCGUc -3'
miRNA:   3'- -CUCGAGUGCAacGCGGucc-GGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 40430 0.66 0.321395
Target:  5'- -cGCgCGCGacgGCGgCAcGGCCGCGCu -3'
miRNA:   3'- cuCGaGUGCaa-CGCgGU-CCGGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 5497 0.66 0.329315
Target:  5'- cAGCgggCGCGUggucGCGCC-GGUCGCuGCGg -3'
miRNA:   3'- cUCGa--GUGCAa---CGCGGuCCGGCG-CGU- -5'
28107 5' -60.6 NC_005887.1 + 16016 0.7 0.182199
Target:  5'- cAGCg-GCGUgcgGCGCguGGCCGgCGCAu -3'
miRNA:   3'- cUCGagUGCAa--CGCGguCCGGC-GCGU- -5'
28107 5' -60.6 NC_005887.1 + 15936 0.7 0.187165
Target:  5'- cGAGCUgCugG-UGCGCCu-GCUGCGCGc -3'
miRNA:   3'- -CUCGA-GugCaACGCGGucCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 30937 0.68 0.23742
Target:  5'- cGAGCUCGCGcucugGCaUCAGGaCCaGCGCAu -3'
miRNA:   3'- -CUCGAGUGCaa---CGcGGUCC-GG-CGCGU- -5'
28107 5' -60.6 NC_005887.1 + 8527 0.67 0.290418
Target:  5'- cGAGCg---GUUGCGCCGGGCgcucgauCGCGUu -3'
miRNA:   3'- -CUCGagugCAACGCGGUCCG-------GCGCGu -5'
28107 5' -60.6 NC_005887.1 + 10097 0.67 0.305984
Target:  5'- -uGC-CGCuGUUcGUGCCAgcgcGGCCGCGCGu -3'
miRNA:   3'- cuCGaGUG-CAA-CGCGGU----CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 14099 0.66 0.337379
Target:  5'- -cGuCUCAgGcUGCGCC-GGCgGCGCGc -3'
miRNA:   3'- cuC-GAGUgCaACGCGGuCCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 41677 0.69 0.225354
Target:  5'- --cCUCACGggccGCGCC-GGCCGcCGCAc -3'
miRNA:   3'- cucGAGUGCaa--CGCGGuCCGGC-GCGU- -5'
28107 5' -60.6 NC_005887.1 + 32823 0.66 0.336566
Target:  5'- cGGCUgCAUGgcgcGCGCCGGcgcgcacgcgagcGCCGCGCu -3'
miRNA:   3'- cUCGA-GUGCaa--CGCGGUC-------------CGGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 28994 0.67 0.298493
Target:  5'- -uGCUCGCugUGCGUCgacgcaauGGGCgCGCGCAu -3'
miRNA:   3'- cuCGAGUGcaACGCGG--------UCCG-GCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 34472 0.69 0.208235
Target:  5'- cGAGCUCGacUGaUUGCagGCCGGGCCuCGCGc -3'
miRNA:   3'- -CUCGAGU--GC-AACG--CGGUCCGGcGCGU- -5'
28107 5' -60.6 NC_005887.1 + 6878 0.71 0.142536
Target:  5'- -cGC-CACGUaGCGCCA-GUCGCGCAg -3'
miRNA:   3'- cuCGaGUGCAaCGCGGUcCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 24626 0.66 0.334136
Target:  5'- aAGCUgACGgcgaucauggGCGCCcggccgaaggugcGGCCGCGCGu -3'
miRNA:   3'- cUCGAgUGCaa--------CGCGGu------------CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 29755 0.67 0.275481
Target:  5'- uGGCUgCGCGUgcagcugccaagcaaGCGCCAGcugugcuaccucgcGCCGCGCGu -3'
miRNA:   3'- cUCGA-GUGCAa--------------CGCGGUC--------------CGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 4884 0.68 0.263171
Target:  5'- -cGCUCGCGacgaugGuCGCCgaGGGCCgGCGCGa -3'
miRNA:   3'- cuCGAGUGCaa----C-GCGG--UCCGG-CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.