miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 30808 0.66 0.356421
Target:  5'- uGGCGcgcaccGCGGCCuCGGCcaguuCGACGuCCAUc -3'
miRNA:   3'- -CCGC------CGUCGG-GCCGuau--GCUGC-GGUA- -5'
28108 3' -61 NC_005887.1 + 30597 0.66 0.356421
Target:  5'- cGUGGCGuCUCGGCcgACGGcCGCCu- -3'
miRNA:   3'- cCGCCGUcGGGCCGuaUGCU-GCGGua -5'
28108 3' -61 NC_005887.1 + 22969 0.66 0.351411
Target:  5'- uGCGGCAGCUgcgcgagcaUGGCGcguugccgcugauCGACGCCGg -3'
miRNA:   3'- cCGCCGUCGG---------GCCGUau-----------GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 17138 0.66 0.348099
Target:  5'- aGCGGUcgAGCagCGGCAUgACGGCGuCCGc -3'
miRNA:   3'- cCGCCG--UCGg-GCCGUA-UGCUGC-GGUa -5'
28108 3' -61 NC_005887.1 + 721 0.66 0.348099
Target:  5'- uGGuCGGCGGUCaUGcGCGUGCGcuCGCCGc -3'
miRNA:   3'- -CC-GCCGUCGG-GC-CGUAUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 18034 0.66 0.348099
Target:  5'- uGCGGCcgaugccggcgAGCCCGcGCAUcauguGCGAcugaaaCGCCGUg -3'
miRNA:   3'- cCGCCG-----------UCGGGC-CGUA-----UGCU------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 25074 0.66 0.339918
Target:  5'- cGGCGGCcGCCgGcGCGaGCuGACGCUc- -3'
miRNA:   3'- -CCGCCGuCGGgC-CGUaUG-CUGCGGua -5'
28108 3' -61 NC_005887.1 + 29377 0.66 0.339918
Target:  5'- aGCGGCAuGCCCucGGCccAUGcCGGCGCgGUc -3'
miRNA:   3'- cCGCCGU-CGGG--CCG--UAU-GCUGCGgUA- -5'
28108 3' -61 NC_005887.1 + 14998 0.66 0.339918
Target:  5'- -aCGGCAGCgCgCGGCGUGCGucgauCGCgAg -3'
miRNA:   3'- ccGCCGUCG-G-GCCGUAUGCu----GCGgUa -5'
28108 3' -61 NC_005887.1 + 26086 0.66 0.339918
Target:  5'- aGCGGCccGCgCGGCGUuucAUGGCGUCGa -3'
miRNA:   3'- cCGCCGu-CGgGCCGUA---UGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 13511 0.66 0.339918
Target:  5'- aGGuCGcCGGCaCgGGCAUGCG-CGCCAc -3'
miRNA:   3'- -CC-GCcGUCG-GgCCGUAUGCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 18984 0.66 0.335076
Target:  5'- cGCGGCAGCauGGCGcagucuaaccaaagGCcGCGCCAUg -3'
miRNA:   3'- cCGCCGUCGggCCGUa-------------UGcUGCGGUA- -5'
28108 3' -61 NC_005887.1 + 41215 0.66 0.331876
Target:  5'- uGCGGCuuUCUGGCAcGCGGCGCa-- -3'
miRNA:   3'- cCGCCGucGGGCCGUaUGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 4529 0.66 0.331876
Target:  5'- cGGCGGCGuCCCGGUcgagGCGAUGagcaCCGa -3'
miRNA:   3'- -CCGCCGUcGGGCCGua--UGCUGC----GGUa -5'
28108 3' -61 NC_005887.1 + 14706 0.66 0.331876
Target:  5'- cGGCgGGCgGGCCgGGCGcgGCGAuCGCgCAg -3'
miRNA:   3'- -CCG-CCG-UCGGgCCGUa-UGCU-GCG-GUa -5'
28108 3' -61 NC_005887.1 + 15878 0.66 0.323975
Target:  5'- aGGCGcaccaGCAGCUCGGUgcgcuCGACGCgCAg -3'
miRNA:   3'- -CCGC-----CGUCGGGCCGuau--GCUGCG-GUa -5'
28108 3' -61 NC_005887.1 + 34347 0.66 0.323975
Target:  5'- uGGCGcCGGCCaCGGCuggagACGAgCGCCc- -3'
miRNA:   3'- -CCGCcGUCGG-GCCGua---UGCU-GCGGua -5'
28108 3' -61 NC_005887.1 + 35722 0.66 0.323975
Target:  5'- cGCGuGCAGCUCGGUcgcgguCGugGCCc- -3'
miRNA:   3'- cCGC-CGUCGGGCCGuau---GCugCGGua -5'
28108 3' -61 NC_005887.1 + 30528 0.66 0.316216
Target:  5'- cGuaGGCGGCCguCGGCcgA-GACGCCAc -3'
miRNA:   3'- -CcgCCGUCGG--GCCGuaUgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 16015 0.67 0.308597
Target:  5'- aGCGGC-GUgCGGC--GCGugGCCGg -3'
miRNA:   3'- cCGCCGuCGgGCCGuaUGCugCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.