miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 3' -61 NC_005887.1 + 5488 0.68 0.259184
Target:  5'- cGUGGUcGCgCCGGUcgcUGCGGCGCCGc -3'
miRNA:   3'- cCGCCGuCG-GGCCGu--AUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 12641 0.68 0.268523
Target:  5'- gGGuCGGCGGacaccaugcgcaugCCGGCGgccguCGACGCCAc -3'
miRNA:   3'- -CC-GCCGUCg-------------GGCCGUau---GCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 15039 0.67 0.293781
Target:  5'- cGCGGCcuGCgCGGCGUA-GGCGUCGa -3'
miRNA:   3'- cCGCCGu-CGgGCCGUAUgCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 17138 0.66 0.348099
Target:  5'- aGCGGUcgAGCagCGGCAUgACGGCGuCCGc -3'
miRNA:   3'- cCGCCG--UCGg-GCCGUA-UGCUGC-GGUa -5'
28108 3' -61 NC_005887.1 + 26914 0.69 0.205367
Target:  5'- cGGCGGCaacGGCuaCCGGCAgACG-CGCCc- -3'
miRNA:   3'- -CCGCCG---UCG--GGCCGUaUGCuGCGGua -5'
28108 3' -61 NC_005887.1 + 40970 0.68 0.252677
Target:  5'- cGCGGUAGCCCuucGGCGgcuCGuCGUCAc -3'
miRNA:   3'- cCGCCGUCGGG---CCGUau-GCuGCGGUa -5'
28108 3' -61 NC_005887.1 + 14433 0.67 0.272608
Target:  5'- aGCGGCGacucgaacagguGCCCGGCAcgcugcuucACGAuCGCCGc -3'
miRNA:   3'- cCGCCGU------------CGGGCCGUa--------UGCU-GCGGUa -5'
28108 3' -61 NC_005887.1 + 721 0.66 0.348099
Target:  5'- uGGuCGGCGGUCaUGcGCGUGCGcuCGCCGc -3'
miRNA:   3'- -CC-GCCGUCGG-GC-CGUAUGCu-GCGGUa -5'
28108 3' -61 NC_005887.1 + 21370 0.68 0.252677
Target:  5'- cGGUgGGCGuGCCCGugaauGUggGCGACGCCAg -3'
miRNA:   3'- -CCG-CCGU-CGGGC-----CGuaUGCUGCGGUa -5'
28108 3' -61 NC_005887.1 + 18034 0.66 0.348099
Target:  5'- uGCGGCcgaugccggcgAGCCCGcGCAUcauguGCGAcugaaaCGCCGUg -3'
miRNA:   3'- cCGCCG-----------UCGGGC-CGUA-----UGCU------GCGGUA- -5'
28108 3' -61 NC_005887.1 + 40421 0.67 0.272608
Target:  5'- cGGCGGCAcGgCCGcGCu--CGACgGCCAg -3'
miRNA:   3'- -CCGCCGU-CgGGC-CGuauGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 24311 0.68 0.259184
Target:  5'- cGUGGCuGCugCCGGC--ACGugGCCAg -3'
miRNA:   3'- cCGCCGuCG--GGCCGuaUGCugCGGUa -5'
28108 3' -61 NC_005887.1 + 13578 0.67 0.286584
Target:  5'- uGGCGcGCAuGCCCGuGCcgGCGAccuCGUCGa -3'
miRNA:   3'- -CCGC-CGU-CGGGC-CGuaUGCU---GCGGUa -5'
28108 3' -61 NC_005887.1 + 21580 0.67 0.293781
Target:  5'- -cCGGCAG-CCGGCGU-CGuuGCGCCGa -3'
miRNA:   3'- ccGCCGUCgGGCCGUAuGC--UGCGGUa -5'
28108 3' -61 NC_005887.1 + 41215 0.66 0.331876
Target:  5'- uGCGGCuuUCUGGCAcGCGGCGCa-- -3'
miRNA:   3'- cCGCCGucGGGCCGUaUGCUGCGgua -5'
28108 3' -61 NC_005887.1 + 14998 0.66 0.339918
Target:  5'- -aCGGCAGCgCgCGGCGUGCGucgauCGCgAg -3'
miRNA:   3'- ccGCCGUCG-G-GCCGUAUGCu----GCGgUa -5'
28108 3' -61 NC_005887.1 + 15688 0.7 0.194803
Target:  5'- -uCGGCgAGCCCGGCcgccugcugcGCGACGCCc- -3'
miRNA:   3'- ccGCCG-UCGGGCCGua--------UGCUGCGGua -5'
28108 3' -61 NC_005887.1 + 21879 0.69 0.200025
Target:  5'- -uCGGCGcGCCCGGCAgcgccGCGgACGUCGUg -3'
miRNA:   3'- ccGCCGU-CGGGCCGUa----UGC-UGCGGUA- -5'
28108 3' -61 NC_005887.1 + 621 0.69 0.218696
Target:  5'- cGGCGGUcuucgcgcuguauccGGCgCGGCGcGCGGCgGCCGa -3'
miRNA:   3'- -CCGCCG---------------UCGgGCCGUaUGCUG-CGGUa -5'
28108 3' -61 NC_005887.1 + 35421 0.68 0.240067
Target:  5'- cGCGuGguGCCgGGCGUGaagcuCGugGCCGg -3'
miRNA:   3'- cCGC-CguCGGgCCGUAU-----GCugCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.