miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28108 5' -51.6 NC_005887.1 + 29984 0.66 0.877054
Target:  5'- -cGUGcGCGAggcccGCGGCAUGuGgGAguGGGCCg -3'
miRNA:   3'- ccUAC-CGCU-----UGCUGUAC-CgCU--UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 35550 0.66 0.877054
Target:  5'- cGAUGGUcugcuCGACAUgugcGGCGAGcGCCg -3'
miRNA:   3'- cCUACCGcuu--GCUGUA----CCGCUUcUGG- -5'
28108 5' -51.6 NC_005887.1 + 18440 0.66 0.877054
Target:  5'- uGAUcGGCGcgaucuCGACGcaGGCGAAGAaCCu -3'
miRNA:   3'- cCUA-CCGCuu----GCUGUa-CCGCUUCU-GG- -5'
28108 5' -51.6 NC_005887.1 + 37095 0.66 0.877054
Target:  5'- aGcgGGCGAGC-ACAgccucGGCGAucgcgcGGCCg -3'
miRNA:   3'- cCuaCCGCUUGcUGUa----CCGCUu-----CUGG- -5'
28108 5' -51.6 NC_005887.1 + 18307 0.66 0.877054
Target:  5'- uGAcGGUGccCGGCGUGGCcGAGGCg -3'
miRNA:   3'- cCUaCCGCuuGCUGUACCGcUUCUGg -5'
28108 5' -51.6 NC_005887.1 + 8503 0.66 0.860619
Target:  5'- cGAgucGCGuAACGGCGUGGCGuucccGGGCg -3'
miRNA:   3'- cCUac-CGC-UUGCUGUACCGCu----UCUGg -5'
28108 5' -51.6 NC_005887.1 + 12642 0.66 0.860619
Target:  5'- cGGGUcGGCGGACaccaugcGCAUGcCGgcGGCCg -3'
miRNA:   3'- -CCUA-CCGCUUGc------UGUACcGCuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 21184 0.66 0.860619
Target:  5'- uGGcguUGGCGAGCacCGUGuuuGCGgcGACCg -3'
miRNA:   3'- -CCu--ACCGCUUGcuGUAC---CGCuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 30275 0.66 0.860619
Target:  5'- aGGcc-GCGAcGCGGCGUGGCu--GGCCg -3'
miRNA:   3'- -CCuacCGCU-UGCUGUACCGcuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 31883 0.66 0.860619
Target:  5'- cGGUGGUGGugGGCGUcGGCca--GCCg -3'
miRNA:   3'- cCUACCGCUugCUGUA-CCGcuucUGG- -5'
28108 5' -51.6 NC_005887.1 + 8390 0.66 0.852016
Target:  5'- ---aGcGCGAcgaaGCGACAaGGCGcguGGGCCg -3'
miRNA:   3'- ccuaC-CGCU----UGCUGUaCCGCu--UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 9277 0.66 0.843169
Target:  5'- ---cGGCGGuCGGCAcGGCGAc-GCCg -3'
miRNA:   3'- ccuaCCGCUuGCUGUaCCGCUucUGG- -5'
28108 5' -51.6 NC_005887.1 + 15276 0.66 0.843169
Target:  5'- ---cGGCGAGCGuCcgccGGCGAacgAGACUg -3'
miRNA:   3'- ccuaCCGCUUGCuGua--CCGCU---UCUGG- -5'
28108 5' -51.6 NC_005887.1 + 18342 0.66 0.843169
Target:  5'- ---cGGCGAcauGCGACGUucgGGCGAcuuccgcguAGACg -3'
miRNA:   3'- ccuaCCGCU---UGCUGUA---CCGCU---------UCUGg -5'
28108 5' -51.6 NC_005887.1 + 32422 0.66 0.843169
Target:  5'- uGGccGGCG-GCGAUGUGGcCGgcGGCg -3'
miRNA:   3'- -CCuaCCGCuUGCUGUACC-GCuuCUGg -5'
28108 5' -51.6 NC_005887.1 + 40789 0.66 0.843169
Target:  5'- ---cGGCGGuCGAgguuCGUGGCGgcGACg -3'
miRNA:   3'- ccuaCCGCUuGCU----GUACCGCuuCUGg -5'
28108 5' -51.6 NC_005887.1 + 35383 0.67 0.834086
Target:  5'- ---cGGCGcGCGGCAgUGGagcgaugcagaGAAGGCCg -3'
miRNA:   3'- ccuaCCGCuUGCUGU-ACCg----------CUUCUGG- -5'
28108 5' -51.6 NC_005887.1 + 5318 0.67 0.824776
Target:  5'- aGGU-GCGAGCGACAUGuCGguGAUCu -3'
miRNA:   3'- cCUAcCGCUUGCUGUACcGCuuCUGG- -5'
28108 5' -51.6 NC_005887.1 + 36038 0.67 0.815251
Target:  5'- ---cGGCGc-CGGCGaGGCGcAAGGCCu -3'
miRNA:   3'- ccuaCCGCuuGCUGUaCCGC-UUCUGG- -5'
28108 5' -51.6 NC_005887.1 + 5659 0.67 0.795599
Target:  5'- ----aGCGAagcauGCGGCAccGGCGAAGGCUg -3'
miRNA:   3'- ccuacCGCU-----UGCUGUa-CCGCUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.