miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 3' -54.7 NC_005887.1 + 34907 0.66 0.646493
Target:  5'- gUCGGuuGCCGuCGAAGGUugGGCc-- -3'
miRNA:   3'- uGGCUu-CGGUuGCUUCCGugCCGuua -5'
28112 3' -54.7 NC_005887.1 + 36170 0.66 0.635061
Target:  5'- uUCGAAGUCGACGAGGaaAUGGCc-- -3'
miRNA:   3'- uGGCUUCGGUUGCUUCcgUGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 1805 0.66 0.635061
Target:  5'- cCCGAAggacgugccGCCGACcu-GGUACGGCAu- -3'
miRNA:   3'- uGGCUU---------CGGUUGcuuCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 28519 0.66 0.635061
Target:  5'- cCCGGcaacaAGCCGACGAAGGguCaGCu-- -3'
miRNA:   3'- uGGCU-----UCGGUUGCUUCCguGcCGuua -5'
28112 3' -54.7 NC_005887.1 + 26398 0.66 0.635061
Target:  5'- cACCc-GGCCAGCGccGGCcACGGCc-- -3'
miRNA:   3'- -UGGcuUCGGUUGCuuCCG-UGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 27772 0.66 0.635061
Target:  5'- cGCCGucgaguGCUAcGCGGcgAGGUACGGCAc- -3'
miRNA:   3'- -UGGCuu----CGGU-UGCU--UCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 27763 0.66 0.63163
Target:  5'- uGCCGAGcgcGCCGGCGA-GGUagagcgccaugacgACGGCGc- -3'
miRNA:   3'- -UGGCUU---CGGUUGCUuCCG--------------UGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 36820 0.66 0.623625
Target:  5'- cCCGAAGCUu-CGGAGGCA--GCAGUu -3'
miRNA:   3'- uGGCUUCGGuuGCUUCCGUgcCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 7882 0.66 0.612198
Target:  5'- uCCGAcucGuCCGACGAgcAGGC-CGGCGAc -3'
miRNA:   3'- uGGCUu--C-GGUUGCU--UCCGuGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 37240 0.66 0.612198
Target:  5'- cGCCG-AGCCGACGcAGGagaacgugaaGCGGCu-- -3'
miRNA:   3'- -UGGCuUCGGUUGCuUCCg---------UGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 34405 0.66 0.612198
Target:  5'- aGCCGuGGCCGGCGc---CACGGCAc- -3'
miRNA:   3'- -UGGCuUCGGUUGCuuccGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 12632 0.66 0.611056
Target:  5'- cCCGAccAGCCAcugcccgcagguuACGAGuGGguCGGCGAUu -3'
miRNA:   3'- uGGCU--UCGGU-------------UGCUU-CCguGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 18096 0.66 0.600789
Target:  5'- gGCCGucAGuCCGGCGcgcguAAGcGCGCGGCGGUc -3'
miRNA:   3'- -UGGCu-UC-GGUUGC-----UUC-CGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 8362 0.67 0.589409
Target:  5'- gGCCGAAGCCuGCGAaagccugacgcAGaGCGCGaCGAa -3'
miRNA:   3'- -UGGCUUCGGuUGCU-----------UC-CGUGCcGUUa -5'
28112 3' -54.7 NC_005887.1 + 4688 0.67 0.589409
Target:  5'- cGCCGGcGGCCAcCGgcGcCGCGGCGAg -3'
miRNA:   3'- -UGGCU-UCGGUuGCuuCcGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 14087 0.67 0.589409
Target:  5'- cGCCGGcggcgcGCCGgcgguuGCGGAGGCgcGCGGCGc- -3'
miRNA:   3'- -UGGCUu-----CGGU------UGCUUCCG--UGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 10151 0.67 0.589409
Target:  5'- gGCCGGAGCgAcgucuACGGcuGGCAuCGGCAu- -3'
miRNA:   3'- -UGGCUUCGgU-----UGCUu-CCGU-GCCGUua -5'
28112 3' -54.7 NC_005887.1 + 32415 0.67 0.589409
Target:  5'- gUCGAcguGGCCGGCGGcgauguGGCcgGCGGCGAUc -3'
miRNA:   3'- uGGCU---UCGGUUGCUu-----CCG--UGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 28321 0.67 0.582599
Target:  5'- uGCUgGAAGCCuguugucggcgucuGCGccGGCGCGGCAu- -3'
miRNA:   3'- -UGG-CUUCGGu-------------UGCuuCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 6405 0.67 0.578068
Target:  5'- cGCgGAAGUCGAC-AAGGCGCuGGCc-- -3'
miRNA:   3'- -UGgCUUCGGUUGcUUCCGUG-CCGuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.