miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 5' -58.7 NC_005887.1 + 20132 0.66 0.472874
Target:  5'- ---cCAGaCCGUAcgGCCCGaugUGCGGGUg -3'
miRNA:   3'- ucuaGUCgGGCGUa-UGGGC---ACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 41943 0.66 0.472874
Target:  5'- uGAgCuGCCCgGCGUGCUcgcguggugCGUGCGcGGCg -3'
miRNA:   3'- uCUaGuCGGG-CGUAUGG---------GCACGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 15906 0.66 0.472874
Target:  5'- cGcgCAGCUgGCcgACCUGcguuccgcGCGGGCc -3'
miRNA:   3'- uCuaGUCGGgCGuaUGGGCa-------CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 12293 0.66 0.469855
Target:  5'- uGAUCAGguuuggcgugaaauCCgGCGcGCCCG-GCGcGGCg -3'
miRNA:   3'- uCUAGUC--------------GGgCGUaUGGGCaCGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 8186 0.66 0.466848
Target:  5'- cAGGUCGGgcaguucgaugucuaCCCGCGcACCgacaCGcGCGGGCu -3'
miRNA:   3'- -UCUAGUC---------------GGGCGUaUGG----GCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 16520 0.66 0.462853
Target:  5'- cGAUCGcGUcgCCGCcgGCgCCGaGUGGGCg -3'
miRNA:   3'- uCUAGU-CG--GGCGuaUG-GGCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 10072 0.66 0.452944
Target:  5'- ---cCAGCaggagCCGCAUuCCguCGUGUGGGCg -3'
miRNA:   3'- ucuaGUCG-----GGCGUAuGG--GCACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 29731 0.66 0.452944
Target:  5'- aGGAUCAcGCgCCGCGcgugcacggucuUGCCCG-GCGaGCu -3'
miRNA:   3'- -UCUAGU-CG-GGCGU------------AUGGGCaCGCcCG- -5'
28112 5' -58.7 NC_005887.1 + 8279 0.66 0.452944
Target:  5'- uGAaCAGCCCGCgcGUGUCgGUgcGCGGGUa -3'
miRNA:   3'- uCUaGUCGGGCG--UAUGGgCA--CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 24922 0.66 0.450976
Target:  5'- cGGAUCGGCaCCGUugucgaucgcgACgCGUgcgcGCGGGCc -3'
miRNA:   3'- -UCUAGUCG-GGCGua---------UGgGCA----CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 16440 0.66 0.443153
Target:  5'- gGGAUCGagaaCCGCGUGCgC--GCGGGCa -3'
miRNA:   3'- -UCUAGUcg--GGCGUAUGgGcaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 29492 0.66 0.443153
Target:  5'- cGAUgucgUAGCCgGCGgcCUCGacgGCGGGCg -3'
miRNA:   3'- uCUA----GUCGGgCGUauGGGCa--CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 23653 0.66 0.426784
Target:  5'- cGGUCAGCgcgucguagucgcguUCGCAcUGCCgGccggcgaUGCGGGCg -3'
miRNA:   3'- uCUAGUCG---------------GGCGU-AUGGgC-------ACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 37410 0.66 0.423934
Target:  5'- cGGUCGcgacuGCCUGCAcGCCagGUGCGGaGUg -3'
miRNA:   3'- uCUAGU-----CGGGCGUaUGGg-CACGCC-CG- -5'
28112 5' -58.7 NC_005887.1 + 10331 0.67 0.414513
Target:  5'- cGGUCuGCCCGUugACCUGgcgGCGGa- -3'
miRNA:   3'- uCUAGuCGGGCGuaUGGGCa--CGCCcg -5'
28112 5' -58.7 NC_005887.1 + 14792 0.67 0.405222
Target:  5'- cAGAUCAaCCCGCuggACCCGaucaaucugGCGGccGCg -3'
miRNA:   3'- -UCUAGUcGGGCGua-UGGGCa--------CGCC--CG- -5'
28112 5' -58.7 NC_005887.1 + 5081 0.67 0.405222
Target:  5'- --uUCGGUCUGC--GCCuCG-GCGGGCg -3'
miRNA:   3'- ucuAGUCGGGCGuaUGG-GCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 33744 0.67 0.390633
Target:  5'- aGGAUCAGCgCGCcgGCCUucacgagcaucugGCGcGGCg -3'
miRNA:   3'- -UCUAGUCGgGCGuaUGGGca-----------CGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 29817 0.67 0.387039
Target:  5'- cGAUCAGCUCGCcggGCaagaCCGUGCacgcgcGGCg -3'
miRNA:   3'- uCUAGUCGGGCGua-UG----GGCACGc-----CCG- -5'
28112 5' -58.7 NC_005887.1 + 39623 0.67 0.372886
Target:  5'- -aAUCAGgcacauacgggaauaCCCGUGUcGCCUGUGUGGGUa -3'
miRNA:   3'- ucUAGUC---------------GGGCGUA-UGGGCACGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.