miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28113 3' -64.3 NC_005887.1 + 5392 0.66 0.270871
Target:  5'- aGCCaGCGCgaccgGUgaaCCGGCGggCGGCGcCGCa -3'
miRNA:   3'- -UGG-CGCGa----CG---GGCUGCa-GCCGC-GCGg -5'
28113 3' -64.3 NC_005887.1 + 16959 0.66 0.270871
Target:  5'- aACCGCGCggcgGCa--AUGUCGGCGaGCUc -3'
miRNA:   3'- -UGGCGCGa---CGggcUGCAGCCGCgCGG- -5'
28113 3' -64.3 NC_005887.1 + 28548 0.66 0.270871
Target:  5'- cGCCGgGCUG-CUGAauuUGUaGGCGuCGCCg -3'
miRNA:   3'- -UGGCgCGACgGGCU---GCAgCCGC-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 41521 0.66 0.264366
Target:  5'- gACgGUGCUcggcaagauccGCgaGGCGcUCGGCGCGCa -3'
miRNA:   3'- -UGgCGCGA-----------CGggCUGC-AGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 27045 0.66 0.263081
Target:  5'- gACCGCGCacgcugccGCCCGACuucuucacgaacUCGGUGcCGCg -3'
miRNA:   3'- -UGGCGCGa-------CGGGCUGc-----------AGCCGC-GCGg -5'
28113 3' -64.3 NC_005887.1 + 13646 0.66 0.260524
Target:  5'- aGCCGaGCaGCaCCGACGUgcagaacgcgaucagCGGCGCGaCg -3'
miRNA:   3'- -UGGCgCGaCG-GGCUGCA---------------GCCGCGCgG- -5'
28113 3' -64.3 NC_005887.1 + 7429 0.66 0.264366
Target:  5'- cGCCGC-CUcGUuuGGCGcUGGCGUGCg -3'
miRNA:   3'- -UGGCGcGA-CGggCUGCaGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 14614 0.66 0.270871
Target:  5'- gGCCGUcg-GCgCCGuCGagGGCGCGCUc -3'
miRNA:   3'- -UGGCGcgaCG-GGCuGCagCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 26964 0.66 0.24561
Target:  5'- cCUGCagGCcGUUCGGCGaCGGUGUGCCg -3'
miRNA:   3'- uGGCG--CGaCGGGCUGCaGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 15866 0.66 0.270871
Target:  5'- cCCGCGCgcaGCa-GGCGcaccagcagcUCGGUGCGCUc -3'
miRNA:   3'- uGGCGCGa--CGggCUGC----------AGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 3766 0.66 0.257988
Target:  5'- uUCGCGUcguacugGCUCGACGagGGCcGCGaCCg -3'
miRNA:   3'- uGGCGCGa------CGGGCUGCagCCG-CGC-GG- -5'
28113 3' -64.3 NC_005887.1 + 39176 0.66 0.270871
Target:  5'- gACgCGCGCgagauCCCGAacaCGUCGGCcaacugcugcaGCGUCa -3'
miRNA:   3'- -UG-GCGCGac---GGGCU---GCAGCCG-----------CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 31381 0.66 0.251736
Target:  5'- cUCGaCGC-GCUCGGCGUagCGGUGCGUg -3'
miRNA:   3'- uGGC-GCGaCGGGCUGCA--GCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 35330 0.66 0.24561
Target:  5'- uGCCGCGC-GCCgCGGCGgcCGGCcacgagcuucaCGCCc -3'
miRNA:   3'- -UGGCGCGaCGG-GCUGCa-GCCGc----------GCGG- -5'
28113 3' -64.3 NC_005887.1 + 23237 0.66 0.251736
Target:  5'- gGCaCGCGa-GCggCGGCgGUCGGCGCGCa -3'
miRNA:   3'- -UG-GCGCgaCGg-GCUG-CAGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 15633 0.66 0.24561
Target:  5'- gGCCGgGCUcgccgaucaggGCgCCG-UGUCGcagauGCGCGCCg -3'
miRNA:   3'- -UGGCgCGA-----------CG-GGCuGCAGC-----CGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 34634 0.66 0.251736
Target:  5'- cGCCGUuC-GCgUCGACGa-GGCGCGCCg -3'
miRNA:   3'- -UGGCGcGaCG-GGCUGCagCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 4270 0.66 0.251736
Target:  5'- aACUGCuCgGCCCGAUGaUCG-CGCGCg -3'
miRNA:   3'- -UGGCGcGaCGGGCUGC-AGCcGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 40380 0.66 0.254222
Target:  5'- gUCGCGCgcgaggaaaucgugaUGCCCGGCa-CGGCcgacGUGCCg -3'
miRNA:   3'- uGGCGCG---------------ACGGGCUGcaGCCG----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 35061 0.66 0.264366
Target:  5'- --gGuCGCUG-CCGuCGUCGGCGgGCg -3'
miRNA:   3'- uggC-GCGACgGGCuGCAGCCGCgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.