miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28113 3' -64.3 NC_005887.1 + 420 0.72 0.090948
Target:  5'- cGCCGCGCcGCCCGcUGUUGcUGCGCUc -3'
miRNA:   3'- -UGGCGCGaCGGGCuGCAGCcGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 613 0.8 0.021407
Target:  5'- uUCGCGCUGUauCCGGCG-CGGCGCGCg -3'
miRNA:   3'- uGGCGCGACG--GGCUGCaGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 880 0.7 0.122336
Target:  5'- cCCGCGCcGCCgGACGagUCaGGCG-GCCu -3'
miRNA:   3'- uGGCGCGaCGGgCUGC--AG-CCGCgCGG- -5'
28113 3' -64.3 NC_005887.1 + 954 0.66 0.24561
Target:  5'- aGCCGagGCcGCCUGACucguccggCGGCGCggGCCa -3'
miRNA:   3'- -UGGCg-CGaCGGGCUGca------GCCGCG--CGG- -5'
28113 3' -64.3 NC_005887.1 + 1492 0.68 0.190962
Target:  5'- uGCgGCGCUcGCgCGGCG-CGGcCGUGCg -3'
miRNA:   3'- -UGgCGCGA-CGgGCUGCaGCC-GCGCGg -5'
28113 3' -64.3 NC_005887.1 + 1555 0.7 0.125643
Target:  5'- gGCCGCGCcGCgCGAgcgccgcacgcCGUCGGCGUcggGCUc -3'
miRNA:   3'- -UGGCGCGaCGgGCU-----------GCAGCCGCG---CGG- -5'
28113 3' -64.3 NC_005887.1 + 2063 0.66 0.255472
Target:  5'- uGCCGCGCUcguaguaGCCggccggcagguuguCGAUGuucUCGGC-CGCCg -3'
miRNA:   3'- -UGGCGCGA-------CGG--------------GCUGC---AGCCGcGCGG- -5'
28113 3' -64.3 NC_005887.1 + 2257 0.73 0.075124
Target:  5'- uUUGCGCUGCCCGAUcaccgCGGCcgGCGUCa -3'
miRNA:   3'- uGGCGCGACGGGCUGca---GCCG--CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 2953 0.66 0.264366
Target:  5'- gGCCGaCG-UGUCCGuCGUCGccuGCGCGUUa -3'
miRNA:   3'- -UGGC-GCgACGGGCuGCAGC---CGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 3004 0.66 0.254222
Target:  5'- cGCgGCGgUGCCgCGGCGcuugcgcagcuuggCGGCgGCGUCg -3'
miRNA:   3'- -UGgCGCgACGG-GCUGCa-------------GCCG-CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 3164 0.69 0.163542
Target:  5'- uGCCGCuuuuccuucauGC-GgCCGugGUCGGCguucaGCGCCu -3'
miRNA:   3'- -UGGCG-----------CGaCgGGCugCAGCCG-----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 3239 0.73 0.079355
Target:  5'- cGCgGCaGCUGCCCGAacuUGUCgaGGCGCGgCa -3'
miRNA:   3'- -UGgCG-CGACGGGCU---GCAG--CCGCGCgG- -5'
28113 3' -64.3 NC_005887.1 + 3552 0.69 0.163542
Target:  5'- uGCCGaCGUcgUGCUCGAUcaUCaGCGCGCCa -3'
miRNA:   3'- -UGGC-GCG--ACGGGCUGc-AGcCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 3766 0.66 0.257988
Target:  5'- uUCGCGUcguacugGCUCGACGagGGCcGCGaCCg -3'
miRNA:   3'- uGGCGCGa------CGGGCUGCagCCG-CGC-GG- -5'
28113 3' -64.3 NC_005887.1 + 3795 0.68 0.1814
Target:  5'- gGCCGUccaGCuUGCgCGGaucgcgGUCGGCGCGCg -3'
miRNA:   3'- -UGGCG---CG-ACGgGCUg-----CAGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 3932 0.7 0.139716
Target:  5'- uGCCGgGCUGCcgCCGuacacauCGUCGGUgccgacguagaaGCGCCc -3'
miRNA:   3'- -UGGCgCGACG--GGCu------GCAGCCG------------CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 4231 0.69 0.167853
Target:  5'- -gCGUGCUGCucgcgCCGACGcUCGGC-CGCa -3'
miRNA:   3'- ugGCGCGACG-----GGCUGC-AGCCGcGCGg -5'
28113 3' -64.3 NC_005887.1 + 4270 0.66 0.251736
Target:  5'- aACUGCuCgGCCCGAUGaUCG-CGCGCg -3'
miRNA:   3'- -UGGCGcGaCGGGCUGC-AGCcGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 4309 0.72 0.098658
Target:  5'- gACUGCGUgcgGCCgaGCGUCGGCGCGa- -3'
miRNA:   3'- -UGGCGCGa--CGGgcUGCAGCCGCGCgg -5'
28113 3' -64.3 NC_005887.1 + 4472 0.67 0.222334
Target:  5'- cCCG-GCUGCCgCGAagGUgccgaaCGGCGCGCg -3'
miRNA:   3'- uGGCgCGACGG-GCUg-CA------GCCGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.