miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28113 3' -64.3 NC_005887.1 + 5141 1.11 0.000083
Target:  5'- gACCGCGCUGCCCGACGUCGGCGCGCCg -3'
miRNA:   3'- -UGGCGCGACGGGCUGCAGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 613 0.8 0.021407
Target:  5'- uUCGCGCUGUauCCGGCG-CGGCGCGCg -3'
miRNA:   3'- uGGCGCGACG--GGCUGCaGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 40837 0.8 0.022019
Target:  5'- gACCGC-CgGCUCGGCGgcgcgCGGCGCGCCa -3'
miRNA:   3'- -UGGCGcGaCGGGCUGCa----GCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41246 0.77 0.037557
Target:  5'- cACaCGCacCUGCUCGGCGUCGGCaaugGCGCCg -3'
miRNA:   3'- -UG-GCGc-GACGGGCUGCAGCCG----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 14227 0.76 0.043187
Target:  5'- cGCCGCGCUGUUCGGCG-CGGCauccgaucuuGcCGCCg -3'
miRNA:   3'- -UGGCGCGACGGGCUGCaGCCG----------C-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 14008 0.76 0.048278
Target:  5'- cGCCGCGC-GCCUccgcaacCGcCGGCGCGCCg -3'
miRNA:   3'- -UGGCGCGaCGGGcu-----GCaGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 22772 0.75 0.058627
Target:  5'- -aCGUGCUcguugGCUCGACGcCGGCGCgGCCg -3'
miRNA:   3'- ugGCGCGA-----CGGGCUGCaGCCGCG-CGG- -5'
28113 3' -64.3 NC_005887.1 + 14392 0.75 0.058627
Target:  5'- cGCCGCGUucaccUGCUuguCGGCGUCGGCcuGCGCUu -3'
miRNA:   3'- -UGGCGCG-----ACGG---GCUGCAGCCG--CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 24115 0.74 0.063694
Target:  5'- gGCCGUGCUGCgCGuguCGUgCGGUgugaaGCGCCg -3'
miRNA:   3'- -UGGCGCGACGgGCu--GCA-GCCG-----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41940 0.74 0.065295
Target:  5'- aGCUGaGCUGCCCGGCGUgcucgcgUGGUGCGUg -3'
miRNA:   3'- -UGGCgCGACGGGCUGCA-------GCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 40744 0.74 0.069182
Target:  5'- cCCGCGUcgagGCgaUCGcCGUUGGCGCGCCg -3'
miRNA:   3'- uGGCGCGa---CG--GGCuGCAGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 28352 0.74 0.071111
Target:  5'- -aCGaCGCUGCgCG-CGcUCGGCGUGCCg -3'
miRNA:   3'- ugGC-GCGACGgGCuGC-AGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 30108 0.74 0.071111
Target:  5'- aGCUgGCGCUcGCCUaugaggguGGCGUCGGCGCGUUc -3'
miRNA:   3'- -UGG-CGCGA-CGGG--------CUGCAGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41377 0.74 0.071111
Target:  5'- gACCGUGaugcgguguuccUUGCCCGGCGgcagCaGCGCGCCc -3'
miRNA:   3'- -UGGCGC------------GACGGGCUGCa---GcCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 39780 0.74 0.071111
Target:  5'- cGCgGCGCUcGCgCCGAuCGUUGcGCGCGUCg -3'
miRNA:   3'- -UGgCGCGA-CG-GGCU-GCAGC-CGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 2257 0.73 0.075124
Target:  5'- uUUGCGCUGCCCGAUcaccgCGGCcgGCGUCa -3'
miRNA:   3'- uGGCGCGACGGGCUGca---GCCG--CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 42046 0.73 0.075124
Target:  5'- gGCCGUGCUGCUgauaGGCGa--GCGCGCCg -3'
miRNA:   3'- -UGGCGCGACGGg---CUGCagcCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 33824 0.73 0.077212
Target:  5'- cGCCGCGCcagaUGCUCGugaAgGcCGGCGCGCUg -3'
miRNA:   3'- -UGGCGCG----ACGGGC---UgCaGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 28248 0.73 0.078062
Target:  5'- uGCgGCGCacaGCCCGAUguugcucgacgaccaGUCGGCGUGCg -3'
miRNA:   3'- -UGgCGCGa--CGGGCUG---------------CAGCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 3239 0.73 0.079355
Target:  5'- cGCgGCaGCUGCCCGAacuUGUCgaGGCGCGgCa -3'
miRNA:   3'- -UGgCG-CGACGGGCU---GCAG--CCGCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.