miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28113 3' -64.3 NC_005887.1 + 10211 0.7 0.122336
Target:  5'- gUCGCGUcgaUGCCCG-CGccggaCGGCGCGUCu -3'
miRNA:   3'- uGGCGCG---ACGGGCuGCa----GCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 40270 0.71 0.104137
Target:  5'- uGCUGcCGCUGgCCGGCaaGUCGGUGcCGCUc -3'
miRNA:   3'- -UGGC-GCGACgGGCUG--CAGCCGC-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 12061 0.71 0.106982
Target:  5'- cGCCGCGCUGCagcAgGUCGGCaCGUCg -3'
miRNA:   3'- -UGGCGCGACGggcUgCAGCCGcGCGG- -5'
28113 3' -64.3 NC_005887.1 + 16129 0.71 0.106982
Target:  5'- cGCCGCGCgcaaccacCCCGccaACcacCGGCGCGCCg -3'
miRNA:   3'- -UGGCGCGac------GGGC---UGca-GCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 33751 0.71 0.109901
Target:  5'- -gCGCGCcgGCCUucacgagcaucuGGCG-CGGCGUGCCg -3'
miRNA:   3'- ugGCGCGa-CGGG------------CUGCaGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 12592 0.71 0.109901
Target:  5'- cGCCGacccgGCCgCGACGcUCGGCGUGCUg -3'
miRNA:   3'- -UGGCgcga-CGG-GCUGC-AGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 40948 0.71 0.112894
Target:  5'- cGCCgaGCGCaUGCUCGACcgcuUCGGCGCggGCCu -3'
miRNA:   3'- -UGG--CGCG-ACGGGCUGc---AGCCGCG--CGG- -5'
28113 3' -64.3 NC_005887.1 + 41617 0.71 0.112894
Target:  5'- gGCCgGCGCgGCCCGugaggaucugcuGCGUCuGCGCGgCg -3'
miRNA:   3'- -UGG-CGCGaCGGGC------------UGCAGcCGCGCgG- -5'
28113 3' -64.3 NC_005887.1 + 17266 0.71 0.115963
Target:  5'- gAUCGUGCcggGCgaGACGUCgGGCGgCGCCg -3'
miRNA:   3'- -UGGCGCGa--CGggCUGCAG-CCGC-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 29740 0.72 0.097068
Target:  5'- cGCCGCGCgugcacggucuUGCCCGGCGagcugaucgcgaggaUCGcCGCGUCg -3'
miRNA:   3'- -UGGCGCG-----------ACGGGCUGC---------------AGCcGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 13347 0.72 0.091195
Target:  5'- cGCCGCGCaguggaaggaaaagaGCCCGGCGaUGGCGCucgcgcugaagGCCg -3'
miRNA:   3'- -UGGCGCGa--------------CGGGCUGCaGCCGCG-----------CGG- -5'
28113 3' -64.3 NC_005887.1 + 420 0.72 0.090948
Target:  5'- cGCCGCGCcGCCCGcUGUUGcUGCGCUc -3'
miRNA:   3'- -UGGCGCGaCGGGCuGCAGCcGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41246 0.77 0.037557
Target:  5'- cACaCGCacCUGCUCGGCGUCGGCaaugGCGCCg -3'
miRNA:   3'- -UG-GCGc-GACGGGCUGCAGCCG----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 14227 0.76 0.043187
Target:  5'- cGCCGCGCUGUUCGGCG-CGGCauccgaucuuGcCGCCg -3'
miRNA:   3'- -UGGCGCGACGGGCUGCaGCCG----------C-GCGG- -5'
28113 3' -64.3 NC_005887.1 + 14008 0.76 0.048278
Target:  5'- cGCCGCGC-GCCUccgcaacCGcCGGCGCGCCg -3'
miRNA:   3'- -UGGCGCGaCGGGcu-----GCaGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 22772 0.75 0.058627
Target:  5'- -aCGUGCUcguugGCUCGACGcCGGCGCgGCCg -3'
miRNA:   3'- ugGCGCGA-----CGGGCUGCaGCCGCG-CGG- -5'
28113 3' -64.3 NC_005887.1 + 24115 0.74 0.063694
Target:  5'- gGCCGUGCUGCgCGuguCGUgCGGUgugaaGCGCCg -3'
miRNA:   3'- -UGGCGCGACGgGCu--GCA-GCCG-----CGCGG- -5'
28113 3' -64.3 NC_005887.1 + 41940 0.74 0.065295
Target:  5'- aGCUGaGCUGCCCGGCGUgcucgcgUGGUGCGUg -3'
miRNA:   3'- -UGGCgCGACGGGCUGCA-------GCCGCGCGg -5'
28113 3' -64.3 NC_005887.1 + 40744 0.74 0.069182
Target:  5'- cCCGCGUcgagGCgaUCGcCGUUGGCGCGCCg -3'
miRNA:   3'- uGGCGCGa---CG--GGCuGCAGCCGCGCGG- -5'
28113 3' -64.3 NC_005887.1 + 39780 0.74 0.071111
Target:  5'- cGCgGCGCUcGCgCCGAuCGUUGcGCGCGUCg -3'
miRNA:   3'- -UGgCGCGA-CG-GGCU-GCAGC-CGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.