miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 3' -57.2 NC_001491.2 + 117964 0.66 0.852306
Target:  5'- aGGCGGCGAggaggaGACCccucgcCCGCGGC-ACUc -3'
miRNA:   3'- gUCGUCGUUg-----CUGGu-----GGCGCCGaUGA- -5'
2812 3' -57.2 NC_001491.2 + 97381 0.66 0.852306
Target:  5'- gGGcCAGCAcccaGGCacaGCCGCGGuCUGCg -3'
miRNA:   3'- gUC-GUCGUug--CUGg--UGGCGCC-GAUGa -5'
2812 3' -57.2 NC_001491.2 + 74255 0.66 0.84755
Target:  5'- aAGCAGCAgcccucgcucccgccGCGccGCCGCCGCaGCaGCc -3'
miRNA:   3'- gUCGUCGU---------------UGC--UGGUGGCGcCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 144784 0.66 0.84434
Target:  5'- aCGGCGGaggGAUGACCACCGCcggGGUg--- -3'
miRNA:   3'- -GUCGUCg--UUGCUGGUGGCG---CCGauga -5'
2812 3' -57.2 NC_001491.2 + 129523 0.66 0.84434
Target:  5'- aCAGCugugguuGUAGCGGCCGuuGUGGgaGCc -3'
miRNA:   3'- -GUCGu------CGUUGCUGGUggCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 118755 0.66 0.84434
Target:  5'- aAGCGGCGcccgucguccgaGCGcCCGCCGCGGa-ACc -3'
miRNA:   3'- gUCGUCGU------------UGCuGGUGGCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 115976 0.66 0.836181
Target:  5'- gGGCAGCAGC-ACCAgCCGCagaaGGCccGCUc -3'
miRNA:   3'- gUCGUCGUUGcUGGU-GGCG----CCGa-UGA- -5'
2812 3' -57.2 NC_001491.2 + 116868 0.66 0.836181
Target:  5'- aGGCGGgGAgGccggacucacucGCCGCCGUGGCcgGCUa -3'
miRNA:   3'- gUCGUCgUUgC------------UGGUGGCGCCGa-UGA- -5'
2812 3' -57.2 NC_001491.2 + 129831 0.66 0.836181
Target:  5'- uGGUAGCcGCGguggugguaGCCGCgGUGGUUGCa -3'
miRNA:   3'- gUCGUCGuUGC---------UGGUGgCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 52814 0.66 0.835354
Target:  5'- gGGUGGCaAACGGCCuguuGCCgugucugaggauaGCGGCUACc -3'
miRNA:   3'- gUCGUCG-UUGCUGG----UGG-------------CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 69300 0.66 0.827836
Target:  5'- uCAGCGGCAGCcGCCGUCGUGaguuuauuuccaGCUGCg -3'
miRNA:   3'- -GUCGUCGUUGcUGGUGGCGC------------CGAUGa -5'
2812 3' -57.2 NC_001491.2 + 138762 0.66 0.819312
Target:  5'- -uGCAGacACGugCG-CGCGGCUGCg -3'
miRNA:   3'- guCGUCguUGCugGUgGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 54621 0.67 0.810618
Target:  5'- aCGGCGGCAaacagaGCGGCgGCaGCGGCg--- -3'
miRNA:   3'- -GUCGUCGU------UGCUGgUGgCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 33389 0.67 0.792753
Target:  5'- gUAGUAGCGagACGcACCGCCGCgcgugGGUUugUg -3'
miRNA:   3'- -GUCGUCGU--UGC-UGGUGGCG-----CCGAugA- -5'
2812 3' -57.2 NC_001491.2 + 23266 0.67 0.791843
Target:  5'- aAGCGcGCAACGggcgcgcGCCGCCugGCGGCaACUc -3'
miRNA:   3'- gUCGU-CGUUGC-------UGGUGG--CGCCGaUGA- -5'
2812 3' -57.2 NC_001491.2 + 37880 0.67 0.783597
Target:  5'- cCAGCGGCAcccACGGCUuguCCG-GGcCUGCUc -3'
miRNA:   3'- -GUCGUCGU---UGCUGGu--GGCgCC-GAUGA- -5'
2812 3' -57.2 NC_001491.2 + 19157 0.67 0.774306
Target:  5'- aCGGCGGCcACGAUagcaccagugaCACCGUGGgUAUUg -3'
miRNA:   3'- -GUCGUCGuUGCUG-----------GUGGCGCCgAUGA- -5'
2812 3' -57.2 NC_001491.2 + 137698 0.67 0.774306
Target:  5'- -cGCGGCGGCGGCCguggaccgagcgGgCGCGGgaGCg -3'
miRNA:   3'- guCGUCGUUGCUGG------------UgGCGCCgaUGa -5'
2812 3' -57.2 NC_001491.2 + 31715 0.68 0.75535
Target:  5'- uGGCAGCGugGAUaugcCCGUGGUUugGCUg -3'
miRNA:   3'- gUCGUCGUugCUGgu--GGCGCCGA--UGA- -5'
2812 3' -57.2 NC_001491.2 + 145369 0.68 0.754391
Target:  5'- gAGCGGCAgcucuucggggugGCGGCC-CCaGCGGCcggGCg -3'
miRNA:   3'- gUCGUCGU-------------UGCUGGuGG-CGCCGa--UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.