miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 60150 0.66 0.860101
Target:  5'- uGCAcgcGCCugGCCucgagggcccugagaGCcGCUuCCGCCGCCGCg -3'
miRNA:   3'- -CGU---UGG--UGG---------------CGcCGAuGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 146056 0.66 0.857077
Target:  5'- uGCAGCCAggacauggcuUCGCGGCUcucgaaCACCA-UGCg -3'
miRNA:   3'- -CGUUGGU----------GGCGCCGAug----GUGGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 129788 0.66 0.857077
Target:  5'- aGUAGCCGCgGUGGUcGuuGCUGCUGUg -3'
miRNA:   3'- -CGUUGGUGgCGCCGaUggUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 21689 0.66 0.857077
Target:  5'- aGC-AUCAUCGCaGUUACUugCgggGCCGCg -3'
miRNA:   3'- -CGuUGGUGGCGcCGAUGGugG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 102823 0.66 0.857077
Target:  5'- uGCGGCCA-CGCGGgUGgCGCCuguaaugaCGCa -3'
miRNA:   3'- -CGUUGGUgGCGCCgAUgGUGGug------GCG- -5'
2812 5' -57.9 NC_001491.2 + 29960 0.66 0.857077
Target:  5'- --uGCCGCucugggucgCGCGGCggcgACUGCCACCa- -3'
miRNA:   3'- cguUGGUG---------GCGCCGa---UGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 136827 0.66 0.857077
Target:  5'- aUAACaACUGCGGCaGCCuCCGCCu- -3'
miRNA:   3'- cGUUGgUGGCGCCGaUGGuGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 84943 0.66 0.857077
Target:  5'- cGCAACCAgaguaaacgcguCaaaGCGGCcAUCGgCAUCGCa -3'
miRNA:   3'- -CGUUGGU------------Gg--CGCCGaUGGUgGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 145298 0.66 0.849382
Target:  5'- gGCGGCCGacgggguuuUCGCGGCguucUGCgAgUGCCGCg -3'
miRNA:   3'- -CGUUGGU---------GGCGCCG----AUGgUgGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 66458 0.66 0.849382
Target:  5'- uGCAgGCCAgCGCGaGCUucgggAUCACCaacgGCUGCa -3'
miRNA:   3'- -CGU-UGGUgGCGC-CGA-----UGGUGG----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 13160 0.66 0.84782
Target:  5'- cGCAGuCCuguuGCCGgGGCgucguggaaguaGCCGCCGCgCGUg -3'
miRNA:   3'- -CGUU-GG----UGGCgCCGa-----------UGGUGGUG-GCG- -5'
2812 5' -57.9 NC_001491.2 + 2312 0.66 0.841497
Target:  5'- -aAAUCACCGCggGGCggccgcACUACCAUCGg -3'
miRNA:   3'- cgUUGGUGGCG--CCGa-----UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 118308 0.66 0.841497
Target:  5'- gGCAcCCAgCC-CGGCU-CCGggcUCGCCGCg -3'
miRNA:   3'- -CGUuGGU-GGcGCCGAuGGU---GGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 124674 0.66 0.841497
Target:  5'- aGCAuUCGCCaaGGUUccccCCGCCAUCGCc -3'
miRNA:   3'- -CGUuGGUGGcgCCGAu---GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 126780 0.66 0.841497
Target:  5'- gGCuGGCCAUCuuUGGUUGCCACCAUCa- -3'
miRNA:   3'- -CG-UUGGUGGc-GCCGAUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 40147 0.66 0.839898
Target:  5'- gGCGACCGCaCGaaGUUuuguagucacuuCUGCCGCCGCa -3'
miRNA:   3'- -CGUUGGUG-GCgcCGAu-----------GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 66938 0.66 0.833428
Target:  5'- uUAACUGCCcccagcuggguGCGGUUuuaGCCACgGCUGCg -3'
miRNA:   3'- cGUUGGUGG-----------CGCCGA---UGGUGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 59077 0.66 0.833428
Target:  5'- gGCAGCUGCCaUGGCcagGCCACCGuuaaaUGCu -3'
miRNA:   3'- -CGUUGGUGGcGCCGa--UGGUGGUg----GCG- -5'
2812 5' -57.9 NC_001491.2 + 106082 0.66 0.833428
Target:  5'- cGCAAUCcCCGCGGCgaaggACagacCCAgCGCn -3'
miRNA:   3'- -CGUUGGuGGCGCCGa----UGgu--GGUgGCG- -5'
2812 5' -57.9 NC_001491.2 + 104823 0.66 0.833428
Target:  5'- uCAGCCcauagucuACCGCGGUgGCCAUguCCaGCu -3'
miRNA:   3'- cGUUGG--------UGGCGCCGaUGGUGguGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.