miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 2832 0.66 0.578305
Target:  5'- cGUGG-CGCAG-GAUAGUGCGUUuauGCg -3'
miRNA:   3'- -CACCaGCGUCgCUGUCGUGCAGcu-CG- -5'
28121 5' -56.6 NC_005887.1 + 16259 0.68 0.432024
Target:  5'- -cGGUCGCAGCG-CGGCcuCuUCGcGCa -3'
miRNA:   3'- caCCAGCGUCGCuGUCGu-GcAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 32816 0.69 0.367361
Target:  5'- aUGG-CGC-GCGcCGGCGCGcacgCGAGCg -3'
miRNA:   3'- cACCaGCGuCGCuGUCGUGCa---GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12808 0.8 0.07632
Target:  5'- -cGcGUUGCAGCG-CGGCGCGaUCGAGCg -3'
miRNA:   3'- caC-CAGCGUCGCuGUCGUGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 24294 0.66 0.553142
Target:  5'- cGUGGccaGCAGCGcaucaaacggcuugGCAacacGCACGUCG-GCa -3'
miRNA:   3'- -CACCag-CGUCGC--------------UGU----CGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 21606 0.66 0.542301
Target:  5'- -cGGUCGCcugcAGCGucgugaauuucccgGCAGCcgGCGUCGuuGCg -3'
miRNA:   3'- caCCAGCG----UCGC--------------UGUCG--UGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 8120 0.67 0.513406
Target:  5'- --cGUgCGCAcGCaGACA-CGCGUCGAGCa -3'
miRNA:   3'- cacCA-GCGU-CG-CUGUcGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 40072 0.67 0.492415
Target:  5'- aUGaugCGCAccGCGACGuccuGCAUGUCGGGCc -3'
miRNA:   3'- cACca-GCGU--CGCUGU----CGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23508 0.67 0.482069
Target:  5'- gGUGGaaGCGGCGggauggcggGCGGCuGCGaCGAGCu -3'
miRNA:   3'- -CACCagCGUCGC---------UGUCG-UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 39908 0.68 0.432024
Target:  5'- -cGGUCGauugauguGCGACGGCGgccCGUCGcGCu -3'
miRNA:   3'- caCCAGCgu------CGCUGUCGU---GCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 26990 0.68 0.4617
Target:  5'- aGUGGuucgUCGaCGGCGGcCAGCGacUCGGGCg -3'
miRNA:   3'- -CACC----AGC-GUCGCU-GUCGUgcAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17943 0.67 0.482069
Target:  5'- --cGUCGCGGCgGACAGguuccgggccCACGUCGucGCg -3'
miRNA:   3'- cacCAGCGUCG-CUGUC----------GUGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 3841 0.66 0.556407
Target:  5'- -cGGUCGCGGCccu----CGUCGAGCc -3'
miRNA:   3'- caCCAGCGUCGcugucguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 35398 0.68 0.441794
Target:  5'- cGUGGccggccgcCGCGGCGcGCGGCA-GUgGAGCg -3'
miRNA:   3'- -CACCa-------GCGUCGC-UGUCGUgCAgCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8173 0.66 0.556407
Target:  5'- -cGG-CGCcuCGGCgAGCGCGgCGAGCu -3'
miRNA:   3'- caCCaGCGucGCUG-UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23454 0.67 0.486195
Target:  5'- -cGGcUGcCAGCGGCAGCGCGagcagcaaaagcaucUgCGAGCg -3'
miRNA:   3'- caCCaGC-GUCGCUGUCGUGC---------------A-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14502 0.68 0.432024
Target:  5'- cUGGucgaUCGCGGUuGC-GCGCGUCGGGUc -3'
miRNA:   3'- cACC----AGCGUCGcUGuCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 3335 0.69 0.412871
Target:  5'- aUGGaauccaUCGCGGCGACGaaguuGCGCagcgCGAGCg -3'
miRNA:   3'- cACC------AGCGUCGCUGU-----CGUGca--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18641 0.66 0.556407
Target:  5'- cUGGaaCGCcGCGACgAGCAUGUCGcccGCg -3'
miRNA:   3'- cACCa-GCGuCGCUG-UCGUGCAGCu--CG- -5'
28121 5' -56.6 NC_005887.1 + 41328 0.67 0.524039
Target:  5'- -aGGUCGaCGGCGcCAuuGCcgACGcCGAGCa -3'
miRNA:   3'- caCCAGC-GUCGCuGU--CG--UGCaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.